DRSC/TRiP Functional Genomics Resources

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Protein Alignment rump and GBP2

DIOPT Version :10

Sequence 1:NP_649899.1 Gene:rump / 41138 FlyBaseID:FBgn0267790 Length:632 Species:Drosophila melanogaster
Sequence 2:NP_009916.1 Gene:GBP2 / 850346 SGDID:S000000517 Length:427 Species:Saccharomyces cerevisiae


Alignment Length:501 Identity:110/501 - (21%)
Similarity:169/501 - (33%) Gaps:202/501 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 SNSVESREKERDRRGRGAR----------GSRFTD-------ADGNGNGA-----GSQGGG---- 44
            |:|.......|.||.||:|          |||:.|       ..|.|.|.     |.:|||    
Yeast    36 SSSNNGNGSRRQRRDRGSRFNDRYDQSYGGSRYHDDRNWPPRRGGRGRGGSRSFRGGRGGGRGRT 100

  Fly    45 ---VAARDRSRE----RRNCR--VYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESGKARGC 100
               :..||..|:    :||..  :::.|:.:|...:|||:|| ..||.:....: ....|..||.
Yeast   101 LGPIVERDLERQFDATKRNFENSIFVRNLTFDCTPEDLKELF-GTVGEVVEADI-ITSKGHHRGM 163

  Fly   101 GIVEFKDPENVQKALEKMNRYEVNGRELVVKEDH--GEQRDQYGRIVRDGGGGGGGGGGVQGGNG 163
            |.|||...|:||.|:.|.:......|:|:|::|:  .|...::.:                    
Yeast   164 GTVEFTKNESVQDAISKFDGALFMDRKLMVRQDNPPPEAAKEFSK-------------------- 208

  Fly   164 GNNGGGGGGGRDHMDDRDRGFSRRDDDRLSGRNNFNMMSNDYNNSSNYNLYGLSASFLESLGISG 228
                      :...::.|.||                                            
Yeast   209 ----------KATREEIDNGF-------------------------------------------- 219

  Fly   229 PLHNKVFVANLDYKVDNKKLKQVFKLAGKVQSVDLSLDKEGNSRGFAVIEYDHPVEAVQAISMLD 293
                :||:.||.|.::.:.||.:||..|.|...|:.||..|.||||..:.|....|.::||...:
Yeast   220 ----EVFIINLPYSMNWQSLKDMFKECGHVLRADVELDFNGFSRGFGSVIYPTEDEMIRAIDTFN 280

  Fly   294 RQMLFDRRMTVR---------LDRIPDKNEGIKLPEGL-------GGVGI---------GLGPNG 333
            ...:..|.:.||         .||...:.|.::...|.       ..|.|         |:.|.|
Yeast   281 GMEVEGRVLEVREGRFNKRKNNDRYNQRREDLEDTRGTEPGLAQDAAVHIDETAAKFTEGVNPGG 345

  Fly   334 EPLRD---VAHNLPNGGQSQGQLLGNAQQGSQLGSVGSQPNSSAVSNATTNLLNNLTGVMFG--- 392
            :  |:   ...|||                              .|.|.::|.:     :||   
Yeast   346 D--RNCFIYCSNLP------------------------------FSTARSDLFD-----LFGPIG 373

  Fly   393 --NHAAV------QPSPVAPVQKPSLG---------NNTGSGGLNL 421
              |:|.:      ||:.||.|:..:|.         ||...||.:|
Yeast   374 KINNAELKPQENGQPTGVAVVEYENLVDADFCIQKLNNYNYGGCSL 419

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rumpNP_649899.1 PABP-1234 48..435 CDD:130689 91/430 (21%)
RRM1_hnRNPM_like 58..133 CDD:409819 24/76 (32%)
RRM2_hnRNPM_like 234..307 CDD:409820 26/81 (32%)
RRM_SF 565..629 CDD:473069
GBP2NP_009916.1 RRM1_HRB1_GBP2 121..197 CDD:410184 24/77 (31%)
RRM2_HRB1_GBP2 218..292 CDD:410185 26/121 (21%)
RRM3_HRB1_GBP2 347..425 CDD:410186 22/108 (20%)
Blue background indicates that the domain is not in the aligned region.

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