DRSC/TRiP Functional Genomics Resources

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Protein Alignment rump and AT1G60000

DIOPT Version :10

Sequence 1:NP_649899.1 Gene:rump / 41138 FlyBaseID:FBgn0267790 Length:632 Species:Drosophila melanogaster
Sequence 2:NP_176208.1 Gene:AT1G60000 / 842294 AraportID:AT1G60000 Length:258 Species:Arabidopsis thaliana


Alignment Length:253 Identity:47/253 - (18%)
Similarity:80/253 - (31%) Gaps:86/253 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 NCRVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFD-ESGKARGCGIVEFKDPENVQKALEKMN 119
            |.::|..|:||:.....|..:.:..... |.|::.:: ::|::||...|...:.|:....::.::
plant    84 NTKLYFGNLPYNVDSATLAQIIQDFANP-ELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLD 147

  Fly   120 RYEVNGRELVVKEDHGEQRDQYGRIVRDGGGGGGGGGGVQGGNGGNNGGGGGGGRDHMDDRDRGF 184
            ..|..||.|.|                                                      
plant   148 GTEYLGRALKV------------------------------------------------------ 158

  Fly   185 SRRDDDRLSGRNNFNMMSNDYNNSSNYNLYGLSASFLESLGISGPLHNKVFVANLDYKVDNKKLK 249
                        ||    .|....:...||             ....:|:||.||.:.|.::.|.
plant   159 ------------NF----ADKPKPNKEPLY-------------PETEHKLFVGNLSWTVTSESLA 194

  Fly   250 QVFKLAGKVQSVDLSLDKE-GNSRGFAVIEYDHPVEAVQAISMLDRQMLFDRRMTVRL 306
            ..|:..|.|....:..|.: |.|||:..:.|....|...|:..||...|..|.:.|.|
plant   195 GAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNL 252

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rumpNP_649899.1 PABP-1234 48..435 CDD:130689 47/253 (19%)
RRM1_hnRNPM_like 58..133 CDD:409819 17/75 (23%)
RRM2_hnRNPM_like 234..307 CDD:409820 23/74 (31%)
RRM_SF 565..629 CDD:473069
AT1G60000NP_176208.1 RRM_SF 86..165 CDD:473069 20/149 (13%)
RRM 178..257 CDD:440488 24/75 (32%)
Blue background indicates that the domain is not in the aligned region.

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