DRSC/TRiP Functional Genomics Resources

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Protein Alignment rump and RBP45B

DIOPT Version :10

Sequence 1:NP_649899.1 Gene:rump / 41138 FlyBaseID:FBgn0267790 Length:632 Species:Drosophila melanogaster
Sequence 2:NP_172630.1 Gene:RBP45B / 837708 AraportID:AT1G11650 Length:405 Species:Arabidopsis thaliana


Alignment Length:334 Identity:74/334 - (22%)
Similarity:114/334 - (34%) Gaps:93/334 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 VAARDRSRERRNCRVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDE-SGKARGCGIVEFKDP 108
            :::.|:..:..:..:::.::..|.....|.:.||....|::..::..|. :|:.:|.|.|.|.|.
plant   143 LSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDE 207

  Fly   109 ENVQKALEKMNRYEVNGRELVVKEDHGEQRDQYGRIVRDGGGGGGGGGGVQGGNGGNNGGGGGGG 173
            ....:|:.:||....:.|.:.:                   |......||.|..........|..
plant   208 SEQIRAMTEMNGVPCSTRPMRI-------------------GPAASKKGVTGQRDSYQSSAAGVT 253

  Fly   174 RDHMDDRDRGFSRRDDDRLSGRNNFNMMSNDYNNSSNYNLYGLSASFLESLGISGPLHNKVFVAN 238
            .|                           ||.||::                        |||..
plant   254 TD---------------------------NDPNNTT------------------------VFVGG 267

  Fly   239 LDYKVDNKKLKQVFKLAGKVQSVDLSLDKEGNSRGFAVIEYDHPVEAVQAISMLDRQMLFDRRMT 303
            ||..|.:..||.||...|::..|.:   ..|...||  :::.....|.:|:.||:...|  ...|
plant   268 LDASVTDDHLKNVFSQYGEIVHVKI---PAGKRCGF--VQFSEKSCAEEALRMLNGVQL--GGTT 325

  Fly   304 VRLD--RIP-DKNEGIKLPEGLGGVGIGLGPNGEPL-RDVAHNLPN---GGQSQGQLLGNAQQGS 361
            |||.  |.| :|..|.......||.|.|....|..: :|     ||   ||.|.|...|..||..
plant   326 VRLSWGRSPSNKQSGDPSQFYYGGYGQGQEQYGYTMPQD-----PNAYYGGYSGGGYSGGYQQTP 385

  Fly   362 QLGSVGSQP 370
            |   .|.||
plant   386 Q---AGQQP 391

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rumpNP_649899.1 PABP-1234 48..435 CDD:130689 74/331 (22%)
RRM1_hnRNPM_like 58..133 CDD:409819 16/75 (21%)
RRM2_hnRNPM_like 234..307 CDD:409820 23/72 (32%)
RRM_SF 565..629 CDD:473069
RBP45BNP_172630.1 RRM1_SECp43_like 63..142 CDD:409780
RRM2_SECp43_like 154..233 CDD:409781 17/97 (18%)
RRM_SF 260..331 CDD:473069 25/101 (25%)
Blue background indicates that the domain is not in the aligned region.

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