DRSC/TRiP Functional Genomics Resources

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Protein Alignment rump and RBP45A

DIOPT Version :10

Sequence 1:NP_649899.1 Gene:rump / 41138 FlyBaseID:FBgn0267790 Length:632 Species:Drosophila melanogaster
Sequence 2:NP_568815.1 Gene:RBP45A / 835581 AraportID:AT5G54900 Length:387 Species:Arabidopsis thaliana


Alignment Length:341 Identity:68/341 - (19%)
Similarity:116/341 - (34%) Gaps:109/341 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 GAGSQGGGVAARDRSRERRNCRVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDE-SGKARGC 100
            |||.:.......|.:       :::.::..:.....|.|.|:.:.||::..::..|. :|:::|.
plant   141 GAGEKRFQTEGPDHT-------IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGY 198

  Fly   101 GIVEFKDPENVQKALEKMNRYEVNGRELVVKEDHGEQRDQYGRIVRDGGGGGGGGGGVQGGNGGN 165
            |.|.|.|.....:|:.:||....:.|.:.:                              |...|
plant   199 GFVRFADENEQMRAMTEMNGQYCSTRPMRI------------------------------GPAAN 233

  Fly   166 NGGGGGGGRDHMDDRDRGFSRRDDDRLSGRNNFNMMSNDYNNSSNYNLYGLSASFLESLGISGPL 230
                                         :|...|....|.|:...|           .|.:.|.
plant   234 -----------------------------KNALPMQPAMYQNTQGAN-----------AGDNDPN 258

  Fly   231 HNKVFVANLDYKVDNKKLKQVFKLAGKVQSVDLSLDKEGNSRGFAVIEYDHPVEAVQAISMLDRQ 295
            :..:||..||..|.:.:||.:|...|::..|.:   ..|...||  ::|.:...|..|:|:|:..
plant   259 NTTIFVGGLDANVTDDELKSIFGQFGELLHVKI---PPGKRCGF--VQYANKASAEHALSVLNGT 318

  Fly   296 MLFDRRMTVRLDRIPDKNE-----------GIKLPEGLGGVGIGLGPNGEPLRDVAHNLPN---G 346
            .|..:.:.:...|.|:|..           |.. |:..||.|....|   |.:|     ||   |
plant   319 QLGGQSIRLSWGRSPNKQSDQAQWNGGGYYGYP-PQPQGGYGYAAQP---PTQD-----PNAYYG 374

  Fly   347 GQSQGQLLGNAQQGSQ 362
            |.:.   .||.||..|
plant   375 GYTG---YGNYQQQRQ 387

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rumpNP_649899.1 PABP-1234 48..435 CDD:130689 65/330 (20%)
RRM1_hnRNPM_like 58..133 CDD:409819 16/75 (21%)
RRM2_hnRNPM_like 234..307 CDD:409820 19/72 (26%)
RRM_SF 565..629 CDD:473069
RBP45ANP_568815.1 RRM1_SECp43_like 61..138 CDD:409780
RRM2_SECp43_like 153..232 CDD:409781 18/115 (16%)
RRM3_NGR1_NAM8_like 259..330 CDD:409782 19/75 (25%)
Blue background indicates that the domain is not in the aligned region.

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