| Sequence 1: | NP_649899.1 | Gene: | rump / 41138 | FlyBaseID: | FBgn0267790 | Length: | 632 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_112539.2 | Gene: | Cstf2t / 83410 | MGIID: | 1932622 | Length: | 632 | Species: | Mus musculus |
| Alignment Length: | 611 | Identity: | 122/611 - (19%) |
|---|---|---|---|
| Similarity: | 203/611 - (33%) | Gaps: | 207/611 - (33%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 45 VAARDRSRERRNCRVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFD-ESGKARGCGIVEFKDP 108
Fly 109 ENVQKALEKMNRYEVNGRELVVKEDHGEQRDQYGRIVRDGGGGGGGGGGVQGGNGGNNGGGGGGG 173
Fly 174 RDHMDDRDRGFSRRDDDRLSGRNNFNMMSNDYNNSSNYNLYGLSASFLESLGISGPLHNKVFVAN 238
Fly 239 LDYK---------VDNKKLKQVFKLAGKVQSVDLSLDKEGNSR-------GFAVIEYDHPVEAVQ 287
Fly 288 AISMLDRQM---LFDRRMTVRLDRIPDKNEGIKLPEGLGGVGIGLGPNGEPLRDVAHNLPNGGQS 349
Fly 350 QGQLLGNAQQGSQLGSVGSQPN---SSAVSNATTNLLNNLTGVMFGNHAAVQPSPV-APVQKPSL 410
Fly 411 GNNTGSGGLNLNNLNPSILAAVVGNLGNQGGNLS----------NPLLSSSLSNLGLNLGNSGND 465
Fly 466 DNLPPSNVGLSNNYSSGGTGGGNSYSSGNNYSGGG-------------GSSNLGYNAYSSSGG-- 515
Fly 516 ------MGGGNGGVGVDGNDYNTGNPLDVYGGGSNVGNSNVGSANAV----GASRKSDTIIIKNV 570
Fly 571 PITCTWQTLRDKFREIGDVKFAEIRG 596 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| rump | NP_649899.1 | PABP-1234 | 48..435 | CDD:130689 | 82/410 (20%) |
| RRM1_hnRNPM_like | 58..133 | CDD:240831 | 28/75 (37%) | ||
| RRM2_hnRNPM_like | 234..307 | CDD:240832 | 11/91 (12%) | ||
| RRM | <543..>631 | CDD:223796 | 12/58 (21%) | ||
| RRM_SF | 565..630 | CDD:302621 | 8/32 (25%) | ||
| Cstf2t | NP_112539.2 | RRM | <16..>109 | CDD:223796 | 36/172 (21%) |
| RRM_CSTF2_CSTF2T | 18..92 | CDD:241115 | 30/132 (23%) | ||
| CSTF2_hinge | 113..191 | CDD:291025 | 9/83 (11%) | ||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 201..296 | 27/112 (24%) | |||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 365..433 | 14/71 (20%) | |||
| 8 X 5 AA tandem repeats of M-E-T-R-[AG] | 428..466 | 9/52 (17%) | |||
| 12 X 5 AA tandem repeats of G-[AT]-G-[MI]-Q | 508..565 | ||||
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 519..590 | ||||
| CSTF_C | 588..628 | CDD:291002 | |||
| Blue background indicates that the domain is not in the aligned region. | |||||
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 0 | 0.000 | Not matched by this tool. | |||
| Domainoid | 0 | 0.000 | Not matched by this tool. | |||
| eggNOG | 1 | 0.900 | - | - | E1_COG0724 | |
| Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
| Homologene | 0 | 0.000 | Not matched by this tool. | |||
| Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
| Isobase | 0 | 0.000 | Not matched by this tool. | |||
| OMA | 0 | 0.000 | Not matched by this tool. | |||
| OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
| OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
| OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
| orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
| Panther | 0 | 0.000 | Not matched by this tool. | |||
| Phylome | 1 | 0.910 | - | - | ||
| RoundUp | 0 | 0.000 | Not matched by this tool. | |||
| SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
| SwiftOrtho | 1 | 1.000 | - | - | ||
| TreeFam | 0 | 0.000 | Not matched by this tool. | |||
| 3 | 2.810 | |||||