DRSC/TRiP Functional Genomics Resources

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Protein Alignment rump and AT5G06210

DIOPT Version :10

Sequence 1:NP_649899.1 Gene:rump / 41138 FlyBaseID:FBgn0267790 Length:632 Species:Drosophila melanogaster
Sequence 2:NP_196239.1 Gene:AT5G06210 / 830508 AraportID:AT5G06210 Length:146 Species:Arabidopsis thaliana


Alignment Length:115 Identity:31/115 - (26%)
Similarity:52/115 - (45%) Gaps:21/115 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 SQGGGVAARDRSRERRNCRVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDE-SGKARGCGIV 103
            :|..|||:          :::|..:.:....|.|.:.|.: .|.:...|:..|. |.:::|.|.|
plant    27 TQRRGVAS----------KLFIGGLSFCTTEQGLSEAFSK-CGQVVEAQIVMDRVSDRSKGFGFV 80

  Fly   104 EFKDPENVQKALEKMNRYEVNGRELVVKEDHGEQRDQYGRIVRDGGGGGG 153
            .|...:..||||.:.|..::|||.:.|         .|.:..:..|||||
plant    81 TFASADEAQKALMEFNGQQLNGRTIFV---------DYAKAKQSLGGGGG 121

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rumpNP_649899.1 PABP-1234 48..435 CDD:130689 27/107 (25%)
RRM1_hnRNPM_like 58..133 CDD:409819 21/75 (28%)
RRM2_hnRNPM_like 234..307 CDD:409820
RRM_SF 565..629 CDD:473069
AT5G06210NP_196239.1 RRM_SF 34..113 CDD:473069 22/98 (22%)
Blue background indicates that the domain is not in the aligned region.

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