DRSC/TRiP Functional Genomics Resources

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Protein Alignment rump and SR34b

DIOPT Version :10

Sequence 1:NP_649899.1 Gene:rump / 41138 FlyBaseID:FBgn0267790 Length:632 Species:Drosophila melanogaster
Sequence 2:NP_001328194.1 Gene:SR34b / 828027 AraportID:AT4G02430 Length:292 Species:Arabidopsis thaliana


Alignment Length:230 Identity:62/230 - (26%)
Similarity:104/230 - (45%) Gaps:34/230 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 SRERRNCRVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESGKARGCGIVEFKDPENVQKAL 115
            ||..|.  :|:.|:|.|.|.::::|||.: .|.:  ||:......:..|...|||:|..:...|:
plant     3 SRSSRT--IYVGNLPGDIREREVEDLFSK-YGPV--VQIDLKIPPRPPGYAFVEFEDARDADDAI 62

  Fly   116 EKMNRYEVNGRELVVKEDHGEQRDQYGRIVRDGGGGGGGGGGVQGGNGGNNGGGGGGGRDHMDDR 180
            ...:.|:.:|..|.|:..||.:|..:     |..|...|.|  :||.||.:|||          |
plant    63 YGRDGYDFDGHHLRVELAHGGRRSSH-----DARGSYSGRG--RGGRGGGDGGG----------R 110

  Fly   181 DRGFSRRDDDR--LSGRNNFNMMSNDYNNSSNYNLYG----LSASFLESLGISGPLHNKVFVANL 239
            :||.|||.:.|  :||..:    |..:.:..::...|    .|..|.:..|.:| :.:.....::
plant   111 ERGPSRRSEYRVVVSGLPS----SASWQDLKDHMRKGGEVCFSQVFRDGRGTTG-IVDYTSYEDM 170

  Fly   240 DYKVDNKKLKQVFKLA-GKVQSVDLSLDKEGNSRG 273
            .|.:|:.:.:..|... .:|:..|...|....|||
plant   171 KYALDDTEFRNAFSHEYVRVREYDSRRDSRSPSRG 205

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rumpNP_649899.1 PABP-1234 48..435 CDD:130689 62/230 (27%)
RRM1_hnRNPM_like 58..133 CDD:409819 21/74 (28%)
RRM2_hnRNPM_like 234..307 CDD:409820 9/41 (22%)
RRM_SF 565..629 CDD:473069
SR34bNP_001328194.1 RRM1_SF2_plant_like 8..79 CDD:410011 21/75 (28%)
RRM2_SF2_plant_like 120..192 CDD:410014 13/76 (17%)
Blue background indicates that the domain is not in the aligned region.

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