DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rump and AT4G10110

DIOPT Version :10

Sequence 1:NP_649899.1 Gene:rump / 41138 FlyBaseID:FBgn0267790 Length:632 Species:Drosophila melanogaster
Sequence 2:NP_192749.2 Gene:AT4G10110 / 826602 AraportID:AT4G10110 Length:173 Species:Arabidopsis thaliana


Alignment Length:185 Identity:44/185 - (23%)
Similarity:72/185 - (38%) Gaps:55/185 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   226 ISGPLHNKVFVANLDYKVDNKKLKQVFKLAGKVQSVDLSLDKEGNS-RGFAVIEY------DHPV 283
            :||..:..|::.|:|.:|.::.|..:...||:|..:.:..|||.:. :|||..||      |:.|
plant     1 MSGTSNCTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYAV 65

  Fly   284 EAVQA-ISMLDRQMLF-----------------------------DRRMTVRLDRIPDKNEGIKL 318
            :.... :|:.:|.:.|                             ||.....|:|.  .::.|..
plant    66 KLFSGLVSLYNRTLKFAISGQDKLQSNSANSGHRARPQSLAFEHSDRAAYHHLERF--SSQLISP 128

  Fly   319 PEGLGGVGIGLGPNGEPLRDVAHNLPNGGQSQGQLLGNAQQ--GSQLGSVG-SQP 370
            |..|            || |.....|..|.|.|..|..:::  ||.|.|:. |:|
plant   129 PSPL------------PL-DYTQEPPPPGVSNGASLEYSRRVLGSALDSINHSRP 170

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rumpNP_649899.1 PABP-1234 48..435 CDD:130689 44/185 (24%)
RRM1_hnRNPM_like 58..133 CDD:409819
RRM2_hnRNPM_like 234..307 CDD:409820 23/109 (21%)
RRM_SF 565..629 CDD:473069
AT4G10110NP_192749.2 RRM1_SF3B4 9..83 CDD:409771 21/73 (29%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.