Protein Alignment rump and CP29

DIOPT Version :10

• Sequence 1: NP_649899.1
• Gene: rump / 41138
• FlyBaseID: FBgn0267790
• Length: 632
• Species: Drosophila melanogaster
• Sequence 2: NP_001190079.1
• Gene: CP29 / 824514
• AraportID: AT3G53460
• Length: 363
• Species: Arabidopsis thaliana
• Alignment Length: 294
• Identity: 77/294 - (26%)
• Similarity: 127/294 - (43%)
• Gaps: 53/294 - (18%)

  Fly    40 SQGGGVAARDRSRERRNCRVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDE-SGKARGCGIV 103
            :.|...|..:|:....:.::::.|:.::.....|..||.. .|::|.|::.:|: :|::||.|.|
plant    82 ADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFES-AGNVEMVEVIYDKVTGRSRGFGFV 145

  Fly   104 EFKDPENVQKALEKMNRY---------------------EVNGRELVVK--EDHGEQRDQYGRIV 145
            .......|:.|.::.|.|                     |..||.|.|.  ....::.:.:.|..
plant   146 TMSTAAEVEAAAQQFNGYVSRYLCSLLCLYLLIRVLCGLEFEGRPLRVNAGPPPPKREESFSRGP 210

  Fly   146 RDGGGG---GGGGGGVQGGNGGNNGGGGGGGRDHMDDRDRGF-SRRDDDRLSGRNNFNMMSNDYN 206
            |.||.|   |||.|..:||..|:..|||.|     .:|..|: |:|......|
plant   211 RSGGYGSERGGGYGSERGGGYGSERGGGYG-----SERGGGYGSQRSGGGYGG------------ 258

  Fly   207 NSSNYNLYGLSASFLESLGISGPLHNKVFVANLDYKVDNKKLKQVFKLAGKVQSVDLSLDKE-GN 270
              |..:.|| |.|...|...||   |:::|.||.:.||:..|:.:|...|||....:..|:: |.
plant   259 --SQRSSYG-SGSGSGSGSGSG---NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGR 317

  Fly   271 SRGFAVIEYDHPVEAVQAISMLDRQMLFDRRMTV 304
            |:||..:......|..:||:.|:...|..|::.|
plant   318 SKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRV 351

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
rump	NP_649899.1	PABP-1234	48..435	CDD:130689	75/286 (26%)
		RRM1_hnRNPM_like	58..133	CDD:409819	22/98 (22%)
		RRM2_hnRNPM_like	234..307	CDD:409820	22/72 (31%)
		RRM_SF	565..629	CDD:473069
CP29	NP_001190079.1	U2AF_lg	<45..>144	CDD:273727	14/62 (23%)
		RRM_SF	100..199	CDD:473069	22/99 (22%)
		RRM	278..361	CDD:440488	23/74 (31%)