DRSC/TRiP Functional Genomics Resources

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Protein Alignment rump and tia1

DIOPT Version :10

Sequence 1:NP_649899.1 Gene:rump / 41138 FlyBaseID:FBgn0267790 Length:632 Species:Drosophila melanogaster
Sequence 2:NP_997793.1 Gene:tia1 / 793165 ZFINID:ZDB-GENE-030131-1506 Length:386 Species:Danio rerio


Alignment Length:411 Identity:80/411 - (19%)
Similarity:138/411 - (33%) Gaps:111/411 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 VYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESGKARGCGIVEFKDPENVQKALEKMNRYEV 123
            :|:.|:..|.....:..||.:| |..:..::..|.:|....| .|||.:..:...:|..||..::
Zfish    10 LYVGNLSRDVTEALIMQLFGQI-GPCKSCKMIVDTAGNDPYC-FVEFFEHRHAAASLAAMNGRKI 72

  Fly   124 NGRELVV---------KEDHGEQ-------------------------RDQYGRIVRDGGGGGGG 154
            .|:|:.|         |:|....                         |....|:|:|...|...
Zfish    73 MGKEVKVNWATSPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSK 137

  Fly   155 GGG-------------VQGGNGGNNGGGGGGGRDHMDDRDRGFSRRDDDRLSGRNNFNMMSNDYN 206
            |.|             :|     ..||...|||   ..|....:|:..                .
Zfish   138 GYGFVSFFNKWDAENAIQ-----QMGGQWLGGR---QIRTNWATRKPP----------------A 178

  Fly   207 NSSNYNLYGLSASFLESLGISGPLHNKVFVANLDYKVDNKKLKQVFKLAGKVQSVDLSLDKEGNS 271
            ..:.|.......||.|.:..|.|.:..|:...:...:..:.::|.|...|::..|.:..||    
Zfish   179 PKATYETNTKHLSFDEVVNQSSPSNCTVYCGGVTTGLTEQLMRQTFSPFGQIMEVRVFPDK---- 239

  Fly   272 RGFAVIEYDHPVEAVQAISMLDRQML--------FDRRMTVRLDRIPDKNEGIKLPEGLGGVGIG 328
             |::.:.::....|..||..::...|        :.:..|   |.:....: :::|: ...||..
Zfish   240 -GYSFVRFNSHESAAHAIVSVNGTSLEGHIVKCYWGKETT---DMVSPMQQ-VQVPQ-QSKVGFA 298

  Fly   329 LGPNGE------PLRDVAHNLPNG---------GQSQGQL-LGNAQQGSQLGSVGSQPNSSAVSN 377
            ..|.|:      ..:.::..:|||         ||:..|. ..:.|.|:....||:..|...|..
Zfish   299 AQPYGQWGQWYGNAQQISQYVPNGWQVPTYGVYGQAWNQQGFNHLQAGAGWAGVGAVSNGGVVEP 363

  Fly   378 AT----TNLLNNLTGVMFGNH 394
            |.    |.|.|..|....|.|
Zfish   364 AQGVNGTVLANQSTMGTAGYH 384

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rumpNP_649899.1 PABP-1234 48..435 CDD:130689 80/411 (19%)
RRM1_hnRNPM_like 58..133 CDD:409819 20/82 (24%)
RRM2_hnRNPM_like 234..307 CDD:409820 13/80 (16%)
RRM_SF 565..629 CDD:473069
tia1NP_997793.1 RRM1_TIA1 9..82 CDD:410027 19/73 (26%)
RRM2_TIA1 94..171 CDD:410030 14/84 (17%)
RRM3_TIA1 204..275 CDD:410032 12/75 (16%)
Blue background indicates that the domain is not in the aligned region.

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