Protein Alignment rump and ncl

DIOPT Version :9

• Sequence 1: NP_649899.1
• Gene: rump / 41138
• FlyBaseID: FBgn0267790
• Length: 632
• Species: Drosophila melanogaster
• Sequence 2: NP_001070120.2
• Gene: ncl / 767714
• ZFINID: ZDB-GENE-030131-6986
• Length: 705
• Species: Danio rerio
• Alignment Length: 506
• Identity: 99/506 - (19%)
• Similarity: 153/506 - (30%)
• Gaps: 207/506 - (40%)

  Fly    47 ARDRSRERRNCRVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESGKARGCGIVEFKDPENV 111
            :::..:||....:::.|:||.....||:::|.:.|.    :::....:|.:||...:|||.....
Zfish   367 SQENKKERDARTLFVKNLPYSITQDDLREIFDQAVD----IRVPMGNTGTSRGIAYIEFKTEAIA 427

  Fly   112 QKALEKMNRYEVNGRELVVKEDHGEQRDQYGRIVRDGGGGGGGGGGVQGGNG------------- 163
            :||||:....:|.||.::|        |..|...|.||.|......|...|.
Zfish   428 EKALEEAQGSDVQGRSIIV--------DFTGDKSRQGGRGAPSASKVLVVNNLAFSASEDSLQSV 484

  Fly   164 ----------GNNGGGGGGG---RDHMDDRDRGFSRRDDDRLSGRN-NFNMMSNDYNNSSNYNLY 214
                      .|||...|..   .::::|........::..:.||: ......||......
Zfish   485 FEKAVSIRIPQNNGRPKGYAFVEFENVEDSKEALENCNNTDIEGRSIRLEYSQNDRERGGG---- 545

  Fly   215 GLSASFLESLGISGPLHNKVFVANLDYKVDNKKLKQVFKLAGKVQSVDLSLDKE-GNSRGFAVIE 278
                    ..|.|||. ..:||..|.....::.||..|.  |.: :..::.|:: |:|:||..::
Zfish   546 --------GRGNSGPT-KTLFVKGLSDDTTDQTLKDSFD--GAI-AARIATDRDTGSSKGFGFVD 598

  Fly   279 YDHPVEAVQAISMLDRQMLFDRRMTVRLDRIPDKNEGIKLPEGLGGVGIGLGPNGEPLRDVAHNL 343
            :|:..:...|...:|...:...::|  ||....|.||     |.||.|.|
Zfish   599 FDNEQDCKAAKEAMDDGEIDGNKVT--LDYAKPKGEG-----GRGGFGGG--------------- 641

  Fly   344 PNGGQSQGQLLGNAQQGSQLGSVGSQPNSSAVSNATTNLLNNLTGVMFGNHAAVQPSPVAPVQKP 408
             .||                                           ||
Zfish   642 -RGG-------------------------------------------FG---------------- 646

  Fly   409 SLGNNTGSGGLNLNNLNPSILAAVVGNLGNQGGNLSNPLLSSSLSNLGLNLGNSGNDDNLPPSNV 473
              |...|.||                 .|.:||
Zfish   647 --GRGGGRGG-----------------FGGRGG-------------------------------- 660

  Fly   474 GLSNNYSSGGTGGGNSYSSGNNYSGGGGSSNLGYNAYSSSGGMGGGNGGVG 524
                    ||.|||  :..|....||||    |:.    .|..|||.||.|
Zfish   661 --------GGRGGG--FRGGRGGRGGGG----GFR----GGRGGGGRGGFG 693

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
rump	NP_649899.1	PABP-1234	48..435	CDD:130689	78/414 (19%)
		RRM1_hnRNPM_like	58..133	CDD:240831	21/74 (28%)
		RRM2_hnRNPM_like	234..307	CDD:240832	16/73 (22%)
		RRM	<543..>631	CDD:223796
		RRM_SF	565..630	CDD:302621
ncl	NP_001070120.2	RRM1_NCL	287..361	CDD:240849
		RRM	347..630	CDD:223796	62/292 (21%)
		RRM2_NCL	374..450	CDD:240850	23/87 (26%)
		RRM3_NCL	464..535	CDD:240851	9/70 (13%)
		RRM4_NCL	554..631	CDD:240852	18/81 (22%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1174365at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	2	1.920