DRSC/TRiP Functional Genomics Resources

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Protein Alignment rump and TIA1

DIOPT Version :10

Sequence 1:NP_649899.1 Gene:rump / 41138 FlyBaseID:FBgn0267790 Length:632 Species:Drosophila melanogaster
Sequence 2:NP_071505.2 Gene:TIA1 / 7072 HGNCID:11802 Length:386 Species:Homo sapiens


Alignment Length:403 Identity:80/403 - (19%)
Similarity:139/403 - (34%) Gaps:122/403 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 VYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESGKARGCGIVEFKDPENVQKALEKMNRYEV 123
            :|:.|:..|.....:..||.:| |..:..::..|.:|....| .|||.:..:...||..||..::
Human     9 LYVGNLSRDVTEALILQLFSQI-GPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAAALAAMNGRKI 71

  Fly   124 NGRELVV---------KEDHGE------QRDQ-------------------------YGRI---- 144
            .|:|:.|         |:|...      ||.|                         :|||    
Human    72 MGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDAR 136

  Fly   145 -VRDGGGGGGGGGG-------------VQGGNGGNNGGGGGGGRDHMDDRDRGFSRRDD-DRLSG 194
             |:|...|...|.|             :|     ..||...|||   ..|....:|:.. .:.:.
Human   137 VVKDMATGKSKGYGFVSFFNKWDAENAIQ-----QMGGQWLGGR---QIRTNWATRKPPAPKSTY 193

  Fly   195 RNNFNMMSNDYNNSSNYNLYGLSASFLESLGISGPLHNKVFVANLDYKVDNKKLKQVFKLAGKVQ 259
            .:|...:|.|                 |.:..|.|.:..|:...:...:..:.::|.|...|::.
Human   194 ESNTKQLSYD-----------------EVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIM 241

  Fly   260 SVDLSLDKEGNSRGFAVIEYDHPVEAVQAISMLDRQML--------FDRRMTVRLDRIPDKNE-G 315
            .:.:..||     |::.:.::....|..||..::...:        :.:.....::.:..:|: |
Human   242 EIRVFPDK-----GYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIG 301

  Fly   316 IKLPEGLGGVGIGLGPNGEPLRDVAHNLPNG---------GQSQGQLLGNAQQGSQ--LG-SVGS 368
            ...|.|..|...|   |.:   .:...:|||         ||:..|...|..|.|.  :| :.|.
Human   302 YPQPYGQWGQWYG---NAQ---QIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQSSAPWMGPNYGV 360

  Fly   369 QP----NSSAVSN 377
            ||    |.|.:.|
Human   361 QPPQGQNGSMLPN 373

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rumpNP_649899.1 PABP-1234 48..435 CDD:130689 80/403 (20%)
RRM1_hnRNPM_like 58..133 CDD:409819 21/82 (26%)
RRM2_hnRNPM_like 234..307 CDD:409820 10/80 (13%)
RRM_SF 565..629 CDD:473069
TIA1NP_071505.2 RRM1_TIA1 8..81 CDD:410027 20/73 (27%)
RRM2_TIA1 104..181 CDD:410030 15/84 (18%)
RRM3_TIAR 214..286 CDD:241064 10/76 (13%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 354..386 7/20 (35%)
Blue background indicates that the domain is not in the aligned region.

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