DRSC/TRiP Functional Genomics Resources

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Protein Alignment rump and RBM23

DIOPT Version :10

Sequence 1:NP_649899.1 Gene:rump / 41138 FlyBaseID:FBgn0267790 Length:632 Species:Drosophila melanogaster
Sequence 2:NP_001339693.1 Gene:RBM23 / 55147 HGNCID:20155 Length:483 Species:Homo sapiens


Alignment Length:509 Identity:100/509 - (19%)
Similarity:166/509 - (32%) Gaps:206/509 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 ESREKERDR---RGRGARGSRFTDADG-NGNGAGSQGGGVAARDRSR--------------ERRN 56
            |:.:|:|.|   :.|..:.||..|.|. ....:.|:..|...|.|||              .||.
Human   101 ETSKKKRSRSHNKSRDRKRSRSRDRDRYRRRNSRSRSPGRQCRHRSRSWDRRHGSESRSRDHRRE 165

  Fly    57 CRVYISNIP----YDY----------------------------------------RWQDLKDLF 77
            .||:..:.|    |.|                                        |.:||:|.|
Human   166 DRVHYRSPPLATGYRYGHSKSPHFREKSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFF 230

  Fly    78 RRIVGSIEYVQLFFD-ESGKARGCGIVEFKDPENVQKALEKMNRYEVNGRELVVKEDHGEQRDQY 141
             ..||.:..|::..| .|.:::|...|||.:.::|..|: .:....:.|..::|:....|     
Human   231 -SAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAE----- 288

  Fly   142 GRIVRDGGGGGGGGGGVQGGNGGNNGGGGGGGRDHMDDRDRGFSRRDDDRLSGRNNFNMMSNDYN 206
                                                                 :|....|:|:..
Human   289 -----------------------------------------------------KNRLAAMANNLQ 300

  Fly   207 NSSNYNLYGLSASFLESLGISGPLHNKVFVANLDYKVDNKKLKQVFKLAGKVQSVDLSLDKE-GN 270
            .                 |..||:  :::|.:|.:.:....|:.:|:..||:.::.|..|.: |.
Human   301 K-----------------GNGGPM--RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGR 346

  Fly   271 SRGFAVIEYDHPVEAVQAISMLDRQMLFDRRM-----TVRLDRIPDKNEGIKLPEGLGGVGIGLG 330
            |:|:..|.:.....|.:|:..|:...|..|.|     |.|||               ||..|.. 
Human   347 SKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLD---------------GGTDITF- 395

  Fly   331 PNGEPLRDVAHNLPNGGQSQG--QLLGNAQQGSQLGSVGSQPNSSAVSNATTNLLNNLTGVMFGN 393
            |:|:...|:       |.:.|  ||:....:|:     |.|..|:|.:                 
Human   396 PDGDQELDL-------GSAGGRFQLMAKLAEGA-----GIQLPSTAAA----------------- 431

  Fly   394 HAAVQPSPVAPVQKPSLGNNTGSGGLNLNNLNPSILAAV--VGNLGNQGGNLSN 445
             ||...:..|.:|.        :|.:.|..|||:.|.|:  ..||.:|...||:
Human   432 -AAAAAAQAAALQL--------NGAVPLGALNPAALTALSPALNLASQCFQLSS 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rumpNP_649899.1 PABP-1234 48..435 CDD:130689 84/455 (18%)
RRM1_hnRNPM_like 58..133 CDD:409819 23/119 (19%)
RRM2_hnRNPM_like 234..307 CDD:409820 20/78 (26%)
RRM_SF 565..629 CDD:473069
RBM23NP_001339693.1 SF-CC1 143..482 CDD:273721 89/467 (19%)
Blue background indicates that the domain is not in the aligned region.

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