DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rump and myef2

DIOPT Version :9

Sequence 1:NP_649899.1 Gene:rump / 41138 FlyBaseID:FBgn0267790 Length:632 Species:Drosophila melanogaster
Sequence 2:NP_001016035.1 Gene:myef2 / 548789 XenbaseID:XB-GENE-854005 Length:616 Species:Xenopus tropicalis


Alignment Length:661 Identity:213/661 - (32%)
Similarity:317/661 - (47%) Gaps:122/661 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 DASNSVESREKERDRRGRGARGSRFTDADGNGNGAGSQGGGVAARDRSRERRNCRVYISNIPYDY 68
            ::.:.|:..:.....:..|.|.:......|...|.|.:.|         :.|| ||:|||||||.
 Frog    37 ESEDQVKEEKTSLKEKTTGNRKTNRFHPYGKDKGPGEKKG---------QSRN-RVFISNIPYDM 91

  Fly    69 RWQDLKDLFRRIVGSIEYVQLFFDESGKARGCGIVEFKDPENVQKALEKMNRYEVNGRELVVKED 133
            :||.:|||.|..||.:.||:||.|..||:||.|:|||:|.|.|.||:|.||::::|||.|.:|.|
 Frog    92 KWQAIKDLMRDKVGEVTYVELFKDAEGKSRGSGVVEFRDMEYVTKAVEVMNKHDLNGRPLNIKAD 156

  Fly   134 -HGEQRDQYGRIVRDGGGGGGGGGGVQGGNGGNNGGGGGGGRDHMDDRDRGFSRRDDDRLSGRNN 197
             .||..   .|.:..||||||||.|         ||...||  |..|...|.:            
 Frog   157 PDGEHA---RRALSRGGGGGGGGAG---------GGPFPGG--HGSDMAPGIT------------ 195

  Fly   198 FNMMSNDYNNSSNYNLYGLSASFLESLGISGPLHNKVFVANLDYKVDNKKLKQVFKLAGKVQSVD 262
             |:..:..||.:      :....:.:|. :|.|...|||||||:||..||||:||.:||.|:..|
 Frog   196 -NIPPSIVNNPN------IPPEIIGALR-AGRLGTTVFVANLDFKVGWKKLKEVFCIAGTVKRAD 252

  Fly   263 LSLDKEGNSRGFAVIEYDHPVEAVQAISMLDRQMLFDRRMTVRLDRIPDKN---------EGIKL 318
            :..||:|.|||...:.::.|:||||||||.:.|.||||.|.|::|   ||:         :..:|
 Frog   253 IKEDKDGKSRGMGTVTFEQPIEAVQAISMFNGQFLFDRPMHVKMD---DKSLPHDDFADCKTAQL 314

  Fly   319 PEGLGGVGIGLGPNGEPLRDVAHNLPNGGQSQGQLLGNAQQGSQLGSVGSQPNSSAVSNATTNLL 383
            |.||||:|:||||.|:|:            :..|:    ..||.:|::|  |....:.......:
 Frog   315 PRGLGGIGMGLGPGGQPI------------TANQM----SMGSGMGNMG--PGGMGMEGPGFGTM 361

  Fly   384 NNLTGVMFGNHAAVQPSPVAPVQKPSLGNNTGSGGLN-------LNNLNPSILAAVVGNLGNQGG 441
            |.:.|..:|:             ...:.|.:|..|:|       ::....|:.|.:.|.:|..|.
 Frog   362 NRMGGSGYGS-------------MEGINNMSGFSGMNRMTGLGGVDEFRGSLGAGISGGMGGMGT 413

  Fly   442 NLSNPLLSSSLSNLGLNLGNSGNDDNLPPSNVGLSNNYSSGGTGGGNSYSSGNNYSGGGGSSNLG 506
            ::..  :||.:.::.......|.|.:...|.:||:..:  |.:.||.|.:....: ||.|||.:|
 Frog   414 SMGG--MSSGMGDMFRGGMGGGIDRDFGRSEIGLNRGF--GDSFGGMSGAMVGGF-GGMGSSTMG 473

  Fly   507 YNAYSSSGGMGGGNG---GVGVD----------GNDYNTGNPLDVYGGGSNVGNSNVGSANAVGA 558
            ......:.||...|.   |:|:|          |.|    ..:|:..|....|::.:||.:....
 Frog   474 PLGSGMNSGMSAVNSMAMGLGMDRMSSSFDRLGGLD----RTMDMDRGFGGYGSAQLGSGSRDRG 534

  Fly   559 SRKSDTIIIKNVPITCTWQTLRDKFREIGDVKFAEI-----RGNDVGVVRFFKERDAELAIALMD 618
            ..|...|.::|:|...|||.|::||.:.|.|.||||     :....|.|||.....||.|..||:
 Frog   535 MSKGCQIFVRNLPFDLTWQKLKEKFNQCGRVMFAEIKMENGKSKGCGTVRFDCPETAEKACRLMN 599

  Fly   619 GSRLDGRNIKV 629
            |.:::||.|.|
 Frog   600 GIKINGREIDV 610

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rumpNP_649899.1 PABP-1234 48..435 CDD:130689 143/403 (35%)
RRM1_hnRNPM_like 58..133 CDD:240831 43/74 (58%)
RRM2_hnRNPM_like 234..307 CDD:240832 41/72 (57%)
RRM <543..>631 CDD:223796 33/92 (36%)
RRM_SF 565..630 CDD:302621 29/70 (41%)
myef2NP_001016035.1 RRM 13..292 CDD:223796 117/298 (39%)
RRM_SF 81..156 CDD:302621 43/74 (58%)
RRM2_hnRNPM_like 224..297 CDD:240832 41/72 (57%)
Forkhead_N <452..536 CDD:254796 22/88 (25%)
RRM3_MYEF2 540..616 CDD:241106 29/71 (41%)
RRM <541..>616 CDD:223796 29/70 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 91 1.000 Domainoid score I7589
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 281 1.000 Inparanoid score I2829
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1174365at2759
OrthoFinder 1 1.000 - - FOG0003017
OrthoInspector 1 1.000 - - otm48281
Panther 1 1.100 - - O PTHR23003
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1365
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
88.160

Return to query results.
Submit another query.