DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment rump and SF2

DIOPT Version :9

Sequence 1:	NP_649899.1	Gene:	rump / 41138	FlyBaseID:	FBgn0267790	Length:	632	Species:	Drosophila melanogaster
Sequence 2:	NP_001247139.1	Gene:	SF2 / 53443	FlyBaseID:	FBgn0283477	Length:	255	Species:	Drosophila melanogaster

Alignment Length:	231	Identity:	74/231 - (32%)
Similarity:	104/231 - (45%)	Gaps:	54/231 - (23%)

- Green bases have known domain annotations that are detailed below.

  Fly     4 DASNSVESREKERDRRGRGARGSRFTDADGNGNGAGSQGGGVAARDRSRE-------------RR 55
            ||.::|::|:      |....|.|.......|.|.||..|| ...||||:             |.
  Fly    56 DADDAVKARD------GYDYDGYRLRVEFPRGGGPGSYRGG-NRNDRSRDGGGRMGGRGPPAKRS 113

  Fly    56 NCRVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESGKARGCGIVEFKDPENVQKALEKM-- 118
            ..||.::.:|....||||||..|. .|.:.:...:.|      |.|:|||...|:::.|::|:
  Fly   114 QYRVMVTGLPASGSWQDLKDHMRE-AGDVCFADTYKD------GSGVVEFLRHEDMKYAIKKLDD 171

  Fly   119 NRYEVNGRELV---VKEDHGEQRDQYGRIVRDGGGGGGGGGGVQGGNGGNNGGGGGGGRDHMD-D 179
            :|:..:..|:.   |:||.|:         .|.||||||.|      ||..|.||||.||:.| .
  Fly   172 SRFRSHEGEVAYIRVREDSGD---------NDRGGGGGGSG------GGGGGSGGGGSRDYRDRS 221

  Fly   180 RDRGFSRRDDDRLSGRNNFN-MMSNDYNNS---SNY 211
            |.|.||.|  .|..|...:: :....|:.|   |||
  Fly   222 RSRSFSSR--PRRRGTPTYSPVRRQSYSRSRSRSNY 255

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
rump	NP_649899.1	PABP-1234	48..435	CDD:130689	61/187 (33%)
		RRM1_hnRNPM_like	58..133	CDD:240831	23/79 (29%)
		RRM2_hnRNPM_like	234..307	CDD:240832
		RRM	<543..>631	CDD:223796
		RRM_SF	565..630	CDD:302621
SF2	NP_001247139.1	RRM_SF	3..80	CDD:418427	7/29 (24%)
SF2	NP_001247139.1	RRM2_SRSF1_like	115..188	CDD:410013	23/79 (29%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0724
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	2	1.810