DRSC/TRiP Functional Genomics Resources

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Protein Alignment rump and poldip3

DIOPT Version :10

Sequence 1:NP_649899.1 Gene:rump / 41138 FlyBaseID:FBgn0267790 Length:632 Species:Drosophila melanogaster
Sequence 2:XP_012816254.2 Gene:poldip3 / 448024 XenbaseID:XB-GENE-952215 Length:433 Species:Xenopus tropicalis


Alignment Length:433 Identity:76/433 - (17%)
Similarity:131/433 - (30%) Gaps:166/433 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 RRGRGA-RGSRFTDADGNGNGAGSQGGGVAARDRSRERRNCRVYISNIPYDYRWQDLKDLFRRIV 81
            :||.|: ..||.....|.||..           |||    .::.:|:.|....:|...|..::| 
 Frog    12 KRGSGSGMYSRINSRAGTGNNM-----------RSR----LQLPVSSRPVATSFQRTFDARQKI- 60

  Fly    82 GSIEYVQLFFDESGKARGCGIVEFKDPENVQKALEKM----NRYEVNG-----RELVVKEDHGEQ 137
                               |:.:.:....|:.|.||:    .|:.:.|     ||::      ..
 Frog    61 -------------------GVTDARMKLGVKDAREKLVAKDARFRITGKVQDAREML------NS 100

  Fly   138 RDQYGRIVRDGGGGGGGGGGVQGGNGGNNGGGGGGGRDHMDDRDRGFSRRDDDRL-------SGR 195
            |.|:|.:                         |......||.|::...:|....:       ||.
 Frog   101 RKQHGSV-------------------------GENPAKVMDAREKLSLKRSAPSVAVSPTLTSGS 140

  Fly   196 NNFNMMSN---DYNNSSNYNLYGLSASFLESLGISGPLHNKVFVANLDYKVDNKKLKQVFKLAGK 257
            :..|:...   .....||.||    |..::.:.|:              .|:||..||       
 Frog   141 STINLTKTIQIPQQRGSNSNL----AQSMKGMRIN--------------VVNNKPTKQ------- 180

  Fly   258 VQSVDLSLDKEGNSRGFAVIEYDHPVEAVQAISMLDRQMLFDRRMTVRLDRIPDKNEGIKLPEGL 322
               ..:||.::..||   :.|.|...:.::..|:..:||......|::...:|            
 Frog   181 ---EHISLSRQLPSR---LEEEDEEDDELELSSIPAKQMKITATNTLQKRALP------------ 227

  Fly   323 GGVGIGLGPNGEPLRDVAHNLPNGGQSQGQLLGNAQQGSQLGSVGSQPNSSAVSNATTNLLNNL- 386
                                          .....|..:......:|..|:|.....|..|.|: 
 Frog   228 ------------------------------FTKVVQNDTYTAPAVTQAASTAAPLLRTKTLTNMS 262

  Fly   387 -TGVMFGNHAAVQPSPVAPVQKPSLGNNTGSGGLNLNNLNPSI 428
             |.|...::..:|.:...||..|..|..     :.:|||:|.:
 Frog   263 RTLVTKEDNTPLQVASKEPVFSPLEGTK-----MTVNNLHPRV 300

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rumpNP_649899.1 PABP-1234 48..435 CDD:130689 68/402 (17%)
RRM1_hnRNPM_like 58..133 CDD:409819 14/83 (17%)
RRM2_hnRNPM_like 234..307 CDD:409820 15/72 (21%)
RRM_SF 565..629 CDD:473069
poldip3XP_012816254.2 RRM_SKAR 289..357 CDD:410082 4/17 (24%)
Blue background indicates that the domain is not in the aligned region.

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