DRSC/TRiP Functional Genomics Resources

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Protein Alignment rump and srsf9

DIOPT Version :10

Sequence 1:NP_649899.1 Gene:rump / 41138 FlyBaseID:FBgn0267790 Length:632 Species:Drosophila melanogaster
Sequence 2:NP_001004795.1 Gene:srsf9 / 448015 XenbaseID:XB-GENE-491310 Length:225 Species:Xenopus tropicalis


Alignment Length:219 Identity:48/219 - (21%)
Similarity:87/219 - (39%) Gaps:47/219 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   414 TGSGGLNLNNLNPSILAAVVGNLGNQGGNLSNPLLSSSLSNLGLNLGNSGNDDNLPPSNVGLSNN 478
            :|.|.:.:.||...|....:.:|.::.|.:..           :.|.|.|.....|.:.:...:.
 Frog    13 SGDGRIYVGNLPADIREKELEDLFDRYGRIRT-----------IELKNRGGSSAAPFAFISFQDP 66

  Fly   479 YSSGGTGGGNSYSSGNNYSGGGGSSNLGYNAYSSSGGMGGGNGGVGVDGNDYNTGNPLDVYGGGS 543
            ..:     .::..:.|.|.  .||..|......|..|.|||.|     |:....|.|        
 Frog    67 RDA-----EDAVFARNGYE--FGSCRLRVEFPRSFRGSGGGYG-----GSRGRNGPP-------- 111

  Fly   544 NVGNSNVGSANAVGASRKSD-TIIIKNVPITCTWQTLRDKFREIGDVKFAEIRGNDVGVVRFFKE 607
                           ||:|: .:|:..:|.:.:||.|:|..||.|||.:|::..:.:|:|.|.::
 Frog   112 ---------------SRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVHKDGMGIVEFIRK 161

  Fly   608 RDAELAIALMDGSRLDGRNIKVTY 631
            .|.|.|:..:|.::......:.:|
 Frog   162 EDMEYALRKLDDTKFRSHEGETSY 185

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rumpNP_649899.1 PABP-1234 48..435 CDD:130689 5/20 (25%)
RRM1_hnRNPM_like 58..133 CDD:409819
RRM2_hnRNPM_like 234..307 CDD:409820
RRM_SF 565..629 CDD:473069 19/63 (30%)
srsf9NP_001004795.1 RRM_SF 17..90 CDD:473069 14/90 (16%)
RRM2_SRSF9 110..191 CDD:410161 24/99 (24%)
Blue background indicates that the domain is not in the aligned region.

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