DRSC/TRiP Functional Genomics Resources

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Protein Alignment rump and Rox8

DIOPT Version :10

Sequence 1:NP_649899.1 Gene:rump / 41138 FlyBaseID:FBgn0267790 Length:632 Species:Drosophila melanogaster
Sequence 2:NP_732944.2 Gene:Rox8 / 42848 FlyBaseID:FBgn0005649 Length:470 Species:Drosophila melanogaster


Alignment Length:404 Identity:74/404 - (18%)
Similarity:137/404 - (33%) Gaps:116/404 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   231 HNKVFVANLDYKVDNKKLKQVFKLAGKVQSVDLSLDKEG-NSRGFAVIEYDHPVEAVQAISMLDR 294
            |:.:||.:|..:::.:.|::.|...|::.:..:..|... .|:|:|.:.:....||..||..::.
  Fly    94 HHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNG 158

  Fly   295 QMLFDRRMTVRLD----RIPDKNEGIKLPEGLGGVGIGLGPNGEPLRDVAHNLPNGGQSQGQLLG 355
            |.:..|  ::|.:    ::|...|    |...||.|.|:|               ||...    |
  Fly   159 QWIGSR--SIRTNWSTRKLPPPRE----PSKGGGQGGGMG---------------GGPGN----G 198

  Fly   356 NAQQGSQLGSVGSQPNSSAVSNATT-------NLLN----NLTGVMFGNHAAVQPSPVAPVQKPS 409
            :..:|||..:.....|.|:.:|.|.       |:::    :...|.||           |:|...
  Fly   199 SGVKGSQRHTFEEVYNQSSPTNTTVYCGGFPPNVISDDLMHKHFVQFG-----------PIQDVR 252

  Fly   410 LGNNTGSGGLNL-------NNLNPSILAAVVGNL-----GNQGGNLSNPLLSSSLSNLGLNLGNS 462
            :..:.|...:..       :.:..:..:.|.|||     |.:.|.      .:|.:||......:
  Fly   253 VFKDKGFSFIKFVTKEAAAHAIEHTHNSEVHGNLVKCFWGKENGG------DNSANNLNAAAAAA 311

  Fly   463 GNDDNLPPSNVGLSNNYSSGGTGGGNSYSSGNNYSGGGGSS--------------------NLGY 507
            ....|:  :.|..:|...:.|.|......:....:...|::                    .:||
  Fly   312 AASANV--AAVAAANAAVAAGAGMPGQMMTQQQIAAATGAAIPGQMMTPQQIAAQYPYAYQQMGY 374

  Fly   508 -----------------------NAYSSSGGMGGGNGGVGVDGNDYNTGNPLDVYG-GGSNVGNS 548
                                   .||.:|....||...:......|....|...:| .|:.|...
  Fly   375 WYPPATYPTTQMQTQYMQQGYYPYAYPTSAQQAGGVPCIQFSAAGYRMVPPNVAWGVPGTVVPGV 439

  Fly   549 NVGSANAVGASRKS 562
            ...:|:|..|:..|
  Fly   440 TAAAASAAAAANGS 453

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rumpNP_649899.1 PABP-1234 48..435 CDD:130689 44/226 (19%)
RRM1_hnRNPM_like 58..133 CDD:409819
RRM2_hnRNPM_like 234..307 CDD:409820 17/73 (23%)
RRM_SF 565..629 CDD:473069
Rox8NP_732944.2 RRM1_TIA1_like 9..80 CDD:409788
RRM2_TIA1_like 96..170 CDD:409789 17/75 (23%)
RRM_SF 221..292 CDD:473069 12/81 (15%)
Blue background indicates that the domain is not in the aligned region.

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