Protein Alignment rump and rbm4b

DIOPT Version :10

• Sequence 1: NP_649899.1
• Gene: rump / 41138
• FlyBaseID: FBgn0267790
• Length: 632
• Species: Drosophila melanogaster
• Sequence 2: NP_989204.1
• Gene: rbm4b / 394812
• XenbaseID: XB-GENE-494431
• Length: 338
• Species: Xenopus tropicalis
• Alignment Length: 266
• Identity: 44/266 - (16%)
• Similarity: 85/266 - (31%)
• Gaps: 111/266 - (41%)

  Fly    58 RVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESGKARGCGIVEFKDPENVQKALEKMNRYE 122
            ::::.|:|.:....:||.|              |::.|:...|.|::
 Frog     3 KLFVGNLPPEATQSELKSL--------------FEQFGRVTECDIIK------------------ 35

  Fly   123 VNGRELVVKEDHGEQRDQYGRIVRDGGGGGGGGGGVQGGNGGNNGGGGGGGRDHMDDRDRGFSRR 187
                             .||.:                               ||:||     :.
 Frog    36 -----------------NYGFV-------------------------------HMEDR-----KA 47

  Fly   188 DDDRLSGRNNFNMMSNDYNNSSNYNLYGLSASFLESLGISGPLHNKVFVANLDYKVDNKKLKQVF 252
            .|:.:             :|.::|.|:.:..:...|.| ......|:.|:||.....:::|:..|
 Frog    48 ADEAV-------------HNLNHYKLHSVPINVEHSRG-KPKASTKLHVSNLSTSCTSEELRAKF 98

  Fly   253 KLAGKVQSVDLSLDKEGNSRGFAVIEYDHPVEAVQAISMLDRQMLFDRRMTVRLDRIPDKNEGIK 317
            :..|.|...|:..|       :|.:..:...||:.||..||......:||.|:|     ....::
 Frog    99 EEYGAVLECDIVKD-------YAFVHMERSAEALDAIKNLDNTEFKGKRMHVQL-----STSRLR 151

  Fly   318 LPEGLG 323
            :..|:|
 Frog   152 VTPGMG 157

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
rump	NP_649899.1	PABP-1234	48..435	CDD:130689	44/266 (17%)
		RRM1_hnRNPM_like	58..133	CDD:409819	9/74 (12%)
		RRM2_hnRNPM_like	234..307	CDD:409820	19/72 (26%)
		RRM_SF	565..629	CDD:473069
rbm4b	NP_989204.1	RRM_SF	2..68	CDD:473069	19/162 (12%)
		RRM_SF	78..144	CDD:473069	19/72 (26%)
		ZnF_C2HC	161..176	CDD:197667
		COG5222	<162..>201	CDD:227547