Protein Alignment rump and cstf2

DIOPT Version :9

• Sequence 1: NP_649899.1
• Gene: rump / 41138
• FlyBaseID: FBgn0267790
• Length: 632
• Species: Drosophila melanogaster
• Sequence 2: XP_009289373.1
• Gene: cstf2 / 386806
• ZFINID: ZDB-GENE-031118-2
• Length: 508
• Species: Danio rerio
• Alignment Length: 445
• Identity: 88/445 - (19%)
• Similarity: 153/445 - (34%)
• Gaps: 113/445 - (25%)

  Fly    36 NGAGSQGGGVAARDRSRERRNCRVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFD-ESGKARG 99
            |.|.:.....||||.:.:|....|::.||||:...:.|||:|.. ||.:...:|.:| |:||.:|
Zfish     3 NLAVAAAAAAAARDPAVDRSLRSVFVGNIPYEATEEQLKDIFSE-VGLVVSFRLVYDRETGKPKG 66

  Fly   100 CGIVEFKDPENVQKALEKMNRYEVNGRELVVKEDHGEQRDQYGRIVRDGGGGGGGGGGVQGGNGG 164
            .|..|::|.|....|:..:|..|.:||.|
Zfish    67 YGFCEYQDQETALSAMRNLNGREFSGRAL------------------------------------ 95

  Fly   165 NNGGGGGGGRDHMDDRDRGFSRRDDDRLSGRNNFNMMSNDYNNSSNYNLYGLSASFLESLGISGP 229
                                  |.|:..|.:|...:.|           .|..|..:||....|.
Zfish    96 ----------------------RVDNAASEKNKEELKS-----------LGTGAPIIESPYGDGC 127

  Fly   230 LHNKVFVANLDYKVDNKKLKQVFKLAGKVQSVDLSLDKEGNSR-------GFAVIEYDHPVEAVQ 287
            :..:. ..::...|.:...:|:|:|..:::....:..:|..:.       .:|:::....:..|.
Zfish   128 MPEEA-PESISRAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVD 191

  Fly   288 ---AISMLDRQMLF--------DRRMTVRLDRIPDKNEGIKLPEGLGGVGIGLGPNGEPLRDVAH 341
               |:.||.|..:.        ...:......:|..|..:..|:.:.|:.:    ||.|  .:..
Zfish   192 PEIALKMLHRPAVVPPINPSPQPGAVPAPNQPLPQPNVPVSQPQPMPGLHV----NGAP--QMMQ 250

  Fly   342 NLPNGGQSQGQLLGNAQQGSQLG---SVGSQPNSSA-VSNATTNLLNNLTGVMFGNHAAVQPS-- 400
            ....||...|.:.|....|...|   .:|..|.... :.....||.::..|.  ...||::.|
Zfish   251 PPQMGGGVPGPMPGQGPMGPAGGMQPQIGIPPGGPVPMDRGPGNLQDSPVGA--AGQAAIERSQV 313

  Fly   401 PVAPVQKPSLGNNTGSGGL--------NLNNLNPSILAAVVGNLGNQG-GNLSNP 446
            |:...:.|..|...|..|:        ..|:.....|.:|.|.:...| |.:..|
Zfish   314 PIVDPRAPMRGAPQGPPGIPPRGLLGDGPNDPRGGSLVSVTGEVVEPGRGYIGGP 368

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
rump	NP_649899.1	PABP-1234	48..435	CDD:130689	80/419 (19%)
		RRM1_hnRNPM_like	58..133	CDD:240831	27/75 (36%)
		RRM2_hnRNPM_like	234..307	CDD:240832	11/90 (12%)
		RRM	<543..>631	CDD:223796
		RRM_SF	565..630	CDD:302621
cstf2	XP_009289373.1	RRM	<24..>112	CDD:223796	32/157 (20%)
		RRM_CSTF2_CSTF2T	26..100	CDD:241115	29/132 (22%)
		CSTF2_hinge	121..199	CDD:291025	10/78 (13%)
		CSTF_C	464..504	CDD:291002

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0724
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	1	0.900