DRSC/TRiP Functional Genomics Resources

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Protein Alignment rump and srsf4

DIOPT Version :10

Sequence 1:NP_649899.1 Gene:rump / 41138 FlyBaseID:FBgn0267790 Length:632 Species:Drosophila melanogaster
Sequence 2:NP_955868.1 Gene:srsf4 / 321872 ZFINID:ZDB-GENE-030131-591 Length:366 Species:Danio rerio


Alignment Length:233 Identity:59/233 - (25%)
Similarity:88/233 - (37%) Gaps:62/233 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 KERDRRGRGARGSRFTDADGNGNGAGSQGGGVAARDR--SRERRNCRVYISNIPYDYRWQDLKDL 76
            :.||...|..|.:|:      |.|.|..||     ||  ...|.:.|:.:.|:.....||||||.
Zfish    73 QRRDGGNRSGRSNRY------GRGGGGGGG-----DRYGPPTRTDYRLIVENLSSRCSWQDLKDY 126

  Fly    77 FRRIVGSIEYVQLFFDESGKARGCGIVEFKDPENVQKALEKMNRYEVNGRELVVKEDH--GEQRD 139
            .|: .|.:.|.    |.:...:..|::||:...::::||||::..|||||::.:.||.  ..:|.
Zfish   127 MRQ-AGEVTYA----DTNKGRKNEGVIEFRQYSDMKRALEKLDGTEVNGRKIRLIEDRPGARRRR 186

  Fly   140 QYGRIV-----------------RDGGGGGGGGGG-----------------VQGGNGGNNGGGG 170
            .|.|..                 |.....|..|..                 .:..||...||..
Zfish   187 SYSRSASRSRSRSRRSRRSRSHSRTSSRSGASGSRSRSRSTSKKAKSRSSRMEESSNGARKGGDS 251

  Fly   171 GGGRDHMDDRDRGFSRRDDDRLSGRNNFNMMSNDYNNS 208
            |        ||...||...::.|.|.|....|:..:.|
Zfish   252 G--------RDNSLSRSPQNKKSKRENKRGRSDSRSRS 281

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rumpNP_649899.1 PABP-1234 48..435 CDD:130689 49/199 (25%)
RRM1_hnRNPM_like 58..133 CDD:409819 24/74 (32%)
RRM2_hnRNPM_like 234..307 CDD:409820
RRM_SF 565..629 CDD:473069
srsf4NP_955868.1 RRM_SF 1..81 CDD:473069 2/7 (29%)
RRM2_SRSF4 101..182 CDD:410157 27/85 (32%)
Blue background indicates that the domain is not in the aligned region.

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