DRSC/TRiP Functional Genomics Resources

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Protein Alignment rump and Tia1

DIOPT Version :10

Sequence 1:NP_649899.1 Gene:rump / 41138 FlyBaseID:FBgn0267790 Length:632 Species:Drosophila melanogaster
Sequence 2:XP_063142135.1 Gene:Tia1 / 312510 RGDID:1305742 Length:398 Species:Rattus norvegicus


Alignment Length:382 Identity:76/382 - (19%)
Similarity:133/382 - (34%) Gaps:108/382 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 VYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDE-SGKARGCGIVEFKDPENVQKALEKMNRYE 122
            :|:.|:..|.....:..||.:| |..:..::..|: :|....| .|||.:..:...||..||..:
  Rat     9 LYVGNLSRDVTEALILQLFSQI-GPCKNCKMIMDQTAGNDPYC-FVEFHEHRHAAAALAAMNGRK 71

  Fly   123 VNGRELVV---------KEDHGE------QRDQ-------------------------YGRI--- 144
            :.|:|:.|         |:|...      ||.|                         :|||   
  Rat    72 IMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDA 136

  Fly   145 --VRDGGGGGGGGGG-------------VQGGNGGNNGGGGGGGRDHMDDRDRGFSRRDD-DRLS 193
              |:|...|...|.|             :|     ..||...|||   ..|....:|:.. .:.:
  Rat   137 RVVKDMATGKSKGYGFVSFFNKWDAENAIQ-----QMGGQWLGGR---QIRTNWATRKPPAPKST 193

  Fly   194 GRNNFNMMSNDYNNSSNYNLYGLSASFLESLGISGPLHNKVFVANLDYKVDNKKLKQVFKLAGKV 258
            ..:|...:|.|                 |.:..|.|.:..|:...:...:..:.::|.|...|::
  Rat   194 YESNTKQLSYD-----------------EVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQI 241

  Fly   259 QSVDLSLDKEGNSRGFAVIEYDHPVEAVQAISMLDRQML--------FDRRMTVRLDRIPDKNEG 315
            ..:.:..||     |::.|.:.....|..||..::...:        :.:.....::.:..:|: 
  Rat   242 MEIRVFPDK-----GYSFIRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQ- 300

  Fly   316 IKLPEGLGGVGIGLGPNGEPLRDVAHNLPNGGQSQGQ-LLGN--AQQGSQLGSVGSQ 369
            |..|...|..|...| |.:   .:...:|||.|.... :.|.  :|||.:....|||
  Rat   301 IGYPPAYGQWGQWYG-NAQ---QIGQYVPNGWQVPAYGMYGQPWSQQGFKAPGFGSQ 353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rumpNP_649899.1 PABP-1234 48..435 CDD:130689 76/382 (20%)
RRM1_hnRNPM_like 58..133 CDD:409819 21/83 (25%)
RRM2_hnRNPM_like 234..307 CDD:409820 11/80 (14%)
RRM_SF 565..629 CDD:473069
Tia1XP_063142135.1 None
Blue background indicates that the domain is not in the aligned region.

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