Protein Alignment rump and Cstf2t

DIOPT Version :9

• Sequence 1: NP_649899.1
• Gene: rump / 41138
• FlyBaseID: FBgn0267790
• Length: 632
• Species: Drosophila melanogaster
• Sequence 2: NP_001101056.1
• Gene: Cstf2t / 309338
• RGDID: 1310026
• Length: 629
• Species: Rattus norvegicus
• Alignment Length: 612
• Identity: 124/612 - (20%)
• Similarity: 205/612 - (33%)
• Gaps: 204/612 - (33%)

  Fly    45 VAARDRSRERRNCRVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFD-ESGKARGCGIVEFKDP 108
            :|.||.:.:|....|::.||||:...:.|||:|.. |||:...:|.:| |:||.:|.|..|::|.
  Rat     4 LAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSE-VGSVVSFRLVYDRETGKPKGYGFCEYQDQ 67

  Fly   109 ENVQKALEKMNRYEVNGRELVVKEDHGEQRDQYGRIVRDGGGGGGGGGGVQGGNGGNNGGGGGGG 173
            |....|:..:|..|.:||.|
  Rat    68 ETALSAMRNLNGREFSGRAL--------------------------------------------- 87

  Fly   174 RDHMDDRDRGFSRRDDDRLSGRNNFNMMSNDYNNSSNYNLYGLSASFLESLGISGPLHNKVFVAN 238
                         |.|:..|.:|.                     ..|:|||.:.|:.:..:...
  Rat    88 -------------RVDNAASEKNK---------------------EELKSLGPAAPIIDSPYGDP 118

  Fly   239 LDYK---------VDNKKLKQVFKLAGKVQSVDLSLDKEGNSR-------GFAVIEYDHPVEAVQ 287
            :|.:         |.:...:|:|:|..:::....:..:|..:.       .:|::      :|..
  Rat   119 IDPEDAPESITRAVASLPPEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAYALL------QAQV 177

  Fly   288 AISMLDRQM---LFDRRMTVRLDRIPDKNEGIKLPEGLGGVGIGLGPNGEPLRDVAHNLPNGGQS 349
            .:.::|.::   :..|::.| ...||.|::.:..| |.||.|...||.|          |..|.:
  Rat   178 VMRIMDPEIALKILHRKIHV-TPLIPGKSQPVSGP-GPGGPGGPGGPGG----------PGPGPA 230

  Fly   350 QGQLLG-NAQQGSQLGSVGSQPN---SSAVSNATTNLLNNLTGVMFGNHAAVQPSPV-APVQKPS 409
            .|...| |.....|  :...||.   ...|.:....:..::.|      ....|.|: |.|..|.
  Rat   231 PGLCPGPNVMLNQQ--NPAPQPQHLPRRPVKDIPPLMQTSIQG------GIPAPGPIPAAVPGPG 287

  Fly   410 LGNNTGSGGLNLNNLNPSILAAVVGNLGNQGGNLS----------NPLLSSSLSNLGLNLGNSGN 464
            .|:.|..|     .:.|.:...|||.:..:.|.:.          .|:.|..:...|| ||::.|
  Rat   288 PGSLTPGG-----TMQPQVGMPVVGPVPLERGQMQISDPRPPMPRGPMPSGGIPPRGL-LGDAPN 346

  Fly   465 DDNLPPSNVGLSNNYSSGGTGGGNSYSSGNNYSGGG-------------GSSNLGYNAYSSSGG- 515
            |..                  ||...|........|             |..|.|..::...||
  Rat   347 DPR------------------GGTLLSVTGEVEPRGYMGPPHQGPPMHHGHDNRGPASHDMRGGP 393

  Fly   516 -------MGGGNGGVGVDGNDYNTGNPLDVYGGGSNVGNSNVGSANAV----GASRKSDTIIIKN 569
                   :.|...|..:|    ..|.|:|..||..:.|.........|    |..|:.:
  Rat   394 LAADPRMLIGEPRGPMMD----QRGLPMDGRGGRDSRGMEARPMETEVLEPRGMERRME------ 448

  Fly   570 VPITCTWQTLRDKFREIGDVKFAEIRG 596
               ||..:|...:.|.| |.:..|:||
  Rat   449 ---TCAMETRGMEARGI-DARGLEMRG 471

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
rump	NP_649899.1	PABP-1234	48..435	CDD:130689	83/411 (20%)
		RRM1_hnRNPM_like	58..133	CDD:240831	28/75 (37%)
		RRM2_hnRNPM_like	234..307	CDD:240832	11/91 (12%)
		RRM	<543..>631	CDD:223796	13/58 (22%)
		RRM_SF	565..630	CDD:302621	9/32 (28%)
Cstf2t	NP_001101056.1	RRM	<16..>109	CDD:223796	36/172 (21%)
		RRM_CSTF2_CSTF2T	18..92	CDD:241115	30/132 (23%)
		CSTF2_hinge	113..191	CDD:291025	9/83 (11%)
		CSTF_C	585..625	CDD:291002

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0724
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	2.810