DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment rump and Srsf5

DIOPT Version :9

Sequence 1:	NP_649899.1	Gene:	rump / 41138	FlyBaseID:	FBgn0267790	Length:	632	Species:	Drosophila melanogaster
Sequence 2:	XP_038967784.1	Gene:	Srsf5 / 29667	RGDID:	3664	Length:	270	Species:	Rattus norvegicus

Alignment Length:	205	Identity:	47/205 - (22%)
Similarity:	71/205 - (34%)	Gaps:	68/205 - (33%)

- Green bases have known domain annotations that are detailed below.

  Fly    11 SREKERDRRGRGARGSRFTDADGNGNGAGSQGGGVAARDRSRERRNC-------RVYISNIPYDY 68
            :|.:.|..||||....||                 ::|....:|||.       |:.:.|:....
  Rat    72 ARARSRGGRGRGRYSDRF-----------------SSRRPRNDRRNAPPVRTENRLIVENLSSRV 119

  Fly    69 RWQDLKDLFRRIVGSIEYVQLFFDESGKARGCGIVEFKDPENVQKALEKMNRYEVNGRELVVKED 133
            .|||||| |.|..|.:    .|.|........|:|||....:::.|:||::..|:|||::.:.|
  Rat   120 SWQDLKD-FMRQAGEV----TFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIE- 178

  Fly   134 HGEQRDQYGRIVRDGGGGGGGGGGVQGGNGGNNGGGGGGGRDHMDDRDRGFSRRDDDRLSGRNNF 198
                                                  |.:.|...|.|..||......|...:.
  Rat   179 --------------------------------------GSKRHSRSRSRSRSRTRSSSRSRSRSR 205

  Fly   199 NMMSNDYNNS 208
            :..|..|:.|
  Rat   206 SRRSKSYSRS 215

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
rump	NP_649899.1	PABP-1234	48..435	CDD:130689	39/168 (23%)
		RRM1_hnRNPM_like	58..133	CDD:240831	24/74 (32%)
		RRM2_hnRNPM_like	234..307	CDD:240832
		RRM	<543..>631	CDD:223796
		RRM_SF	565..630	CDD:302621
Srsf5	XP_038967784.1	RRM1_SRSF5	5..74	CDD:410008	0/1 (0%)
Srsf5	XP_038967784.1	RRM2_SRSF5	99..179	CDD:410158	27/123 (22%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0724
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.900