DRSC/TRiP Functional Genomics Resources

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Protein Alignment rump and Srsf9

DIOPT Version :10

Sequence 1:NP_649899.1 Gene:rump / 41138 FlyBaseID:FBgn0267790 Length:632 Species:Drosophila melanogaster
Sequence 2:NP_001009255.1 Gene:Srsf9 / 288701 RGDID:1309495 Length:221 Species:Rattus norvegicus


Alignment Length:113 Identity:31/113 - (27%)
Similarity:55/113 - (48%) Gaps:9/113 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   524 GVDGNDYNTGNPLDV-----YGGGSNVGNSNVGSANAVGASRKSDTIIIKNVPITCTWQTLRDKF 583
            |.:|.||.... |.|     |||.   |.....|.|.....|....:::..:|.:.:||.|:|..
  Rat    71 GRNGYDYGQCR-LRVEFPRAYGGR---GGWPRASRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHM 131

  Fly   584 REIGDVKFAEIRGNDVGVVRFFKERDAELAIALMDGSRLDGRNIKVTY 631
            ||.|||.:|:::.:.:|:|.:.::.|.|.|:..:|.::......:.:|
  Rat   132 REAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTKFRSHEGETSY 179

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rumpNP_649899.1 PABP-1234 48..435 CDD:130689
RRM1_hnRNPM_like 58..133 CDD:409819
RRM2_hnRNPM_like 234..307 CDD:409820
RRM_SF 565..629 CDD:473069 17/63 (27%)
Srsf9NP_001009255.1 RRM1_SRSF9 15..86 CDD:241042 6/15 (40%)
RRM2_SRSF9 103..186 CDD:410161 19/77 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 187..221
Interaction with SAFB1. /evidence=ECO:0000250 188..200
Blue background indicates that the domain is not in the aligned region.

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