DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment rump and cip1

DIOPT Version :9

Sequence 1:	NP_649899.1	Gene:	rump / 41138	FlyBaseID:	FBgn0267790	Length:	632	Species:	Drosophila melanogaster
Sequence 2:	NP_596771.1	Gene:	cip1 / 2539823	PomBaseID:	SPBC16A3.18	Length:	490	Species:	Schizosaccharomyces pombe

Alignment Length:	282	Identity:	65/282 - (23%)
Similarity:	113/282 - (40%)	Gaps:	63/282 - (22%)

- Green bases have known domain annotations that are detailed below.

  Fly   387 TGVMFGNHAAVQ--PSP-----VAPVQKPSLGNNTG------------SGGLNLNNLN-----PS 427
            :|....||.|:.  .||     :.|:..|.....|.            ||.|:|.:..     ||
pombe    22 SGTKKSNHEALSRLQSPLNSPKLQPIGSPQASRKTSGSGSSAPLYPKWSGALSLASSRAASPAPS 86

  Fly   428 ILAAVVGNLGNQGGNLSNPLLSSSLSNLGLNLGNSGNDDNLPPSNVGLSNNYSSGGTGGGNSYSS 492
            ......|.  :|.|.|.|       |:.|..|.||.|....|..:   |.|.:|.......::.:
pombe    87 DSFPTFGY--SQLGGLEN-------SSKGSALFNSANSIGTPYLS---SRNSNSANEASAMAFHN 139

  Fly   493 GNNYSGGGGSSNLGYNAYSSSGGMGGGNGGVGVDGNDYNT-GNP-LDVYGGGSNVGNSNVGSANA 555
            .:..||...||.  ..::|:||           .||..:| ..| ||.: ..:.:...:..::|:
pombe   140 VSPPSGAESSSE--SKSFSASG-----------KGNKADTSAEPSLDAF-NSTQIKAGSTANSNS 190

  Fly   556 VGASRKSDT----IIIKNVPITCTWQTLRDKFREIGDVK-FAEIRGNDVGVVR------FFKERD 609
            .......||    |::||:|.:....||.|.|:::|..: :|.....|.|:.|      |::..:
pombe   191 TPVEPGEDTIPTAIVVKNIPFSLEKDTLLDHFKQLGIPRPYAFNYHYDNGIFRGLAFANFYRPEE 255

  Fly   610 AELAIALMDGSRLDGRNIKVTY 631
            |::.:..::|..::||.::|.:
pombe   256 AQVVVQTLNGYEINGRRLRVEW 277

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
rump	NP_649899.1	PABP-1234	48..435	CDD:130689	15/71 (21%)
		RRM1_hnRNPM_like	58..133	CDD:240831
		RRM2_hnRNPM_like	234..307	CDD:240832
		RRM	<543..>631	CDD:223796	22/98 (22%)
		RRM_SF	565..630	CDD:302621	18/71 (25%)
cip1	NP_596771.1	RRM	94..343	CDD:223796	49/210 (23%)
		RRM_PIN4_like	201..279	CDD:240699	19/77 (25%)
		DUF3886	<278..310	CDD:289771	65/282 (23%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0724
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR23003
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	2.000