DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rump and Srsf5

DIOPT Version :10

Sequence 1:NP_649899.1 Gene:rump / 41138 FlyBaseID:FBgn0267790 Length:632 Species:Drosophila melanogaster
Sequence 2:NP_001334344.1 Gene:Srsf5 / 20384 MGIID:98287 Length:270 Species:Mus musculus


Alignment Length:25 Identity:9/25 - (36%)
Similarity:14/25 - (56%) Gaps:3/25 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 EVDPEETIDLEEDRKV---CFCCRA 27
            |:..:|.:||...:.|   |.||:|
Mouse   151 EIPDDEDLDLIPPKSVNSTCMCCQA 175

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rumpNP_649899.1 PABP-1234 48..435 CDD:130689
RRM1_hnRNPM_like 58..133 CDD:409819
RRM2_hnRNPM_like 234..307 CDD:409820
RRM_SF 565..629 CDD:473069
Srsf5NP_001334344.1 RRM1_SRSF5 5..74 CDD:410008
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 73..105
RRM2_SRSF5 99..179 CDD:410158 9/25 (36%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.