DRSC/TRiP Functional Genomics Resources

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Protein Alignment rump and rnp-9

DIOPT Version :9

Sequence 1:NP_649899.1 Gene:rump / 41138 FlyBaseID:FBgn0267790 Length:632 Species:Drosophila melanogaster
Sequence 2:NP_001359585.1 Gene:rnp-9 / 182350 WormBaseID:WBGene00007396 Length:312 Species:Caenorhabditis elegans


Alignment Length:182 Identity:45/182 - (24%)
Similarity:65/182 - (35%) Gaps:54/182 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSMDASN-----------SVESREKERDRRGRGARGSRFTDADGNGNG----AGSQGGGV----- 45
            :|.|.||           .|...:..||.:.:.::|..|.......|.    ||..|..:     
 Worm    94 LSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGMNGKWIGKRAV 158

  Fly    46 ----AARDRSRERR---------------NCRVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFF 91
                |||..|.|.|               |..||:.||.......||:||| ...|.|..|::| 
 Worm   159 RTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTDADLRDLF-STYGDIAEVRIF- 221

  Fly    92 DESGKARGCGIVEFKDPENVQKALEKMNRYEVNGRELVVKEDHGEQRDQYGR 143
                |.:....|.::..|...||:.:||..|:.|.::         |..:||
 Worm   222 ----KTQRYAFVRYEKKECATKAIMEMNGKEMAGNQV---------RCSWGR 260

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rumpNP_649899.1 PABP-1234 48..435 CDD:130689 30/111 (27%)
RRM1_hnRNPM_like 58..133 CDD:240831 22/74 (30%)
RRM2_hnRNPM_like 234..307 CDD:240832
RRM <543..>631 CDD:223796
RRM_SF 565..630 CDD:302621
rnp-9NP_001359585.1 RRM2_TIA1_like 88..162 CDD:240799 13/67 (19%)
RRM3_TIA1_like 189..260 CDD:240800 23/85 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0724
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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