Protein Alignment rump and rnp-7

DIOPT Version :10

• Sequence 1: NP_649899.1
• Gene: rump / 41138
• FlyBaseID: FBgn0267790
• Length: 632
• Species: Drosophila melanogaster
• Sequence 2: NP_498565.2
• Gene: rnp-7 / 176002
• WormBaseID: WBGene00004390
• Length: 332
• Species: Caenorhabditis elegans
• Alignment Length: 334
• Identity: 74/334 - (22%)
• Similarity: 115/334 - (34%)
• Gaps: 107/334 - (32%)

  Fly   231 HNKVFVANLDYKVDNKKLKQVFKLAGKVQSVDLSLDKEGNSRGFAVIEYDHPVEAVQAISMLDRQ 295
            :..:||..::|:....||::.|:..||::.:.:..|:.|..||:|.|||....|...|....|..
 Worm   103 YRTLFVGRINYETSESKLRREFEAYGKIKKLTMVHDEAGKPRGYAFIEYSDKAEMHTAYKKADGI 167

  Fly   296 MLFDRRMTVRLDRIPDKNEGIKLPEGLGGVGIGLGPNGEPLRDVAHNLPNGGQSQGQLLGNAQQG 360
            .:..:|:.|..:|  .:.:...||..|||                          |:  |:.::.
 Worm   168 KVDGKRLVVDYER--GRTQKTWLPRRLGG--------------------------GK--GDTRKT 202

  Fly   361 SQLGSVGSQPNSSAVSNATTNLLNNLTGVMFGNHAAVQPSPVAPVQKPSLGNNTGSGGLNLNNLN 425
            .:..||                                      :::..:.:..|.|..:.:.
 Worm   203 REAKSV--------------------------------------IEEREIASGFGGGYEDRDR-- 227

  Fly   426 PSILAAVVGNLGNQGGNLSNPLLSSSLSNLGLNLGNSGNDDNLPPSNVGLSNNYSSGGTGGGNSY 490
                        .:.|  |......|..|.|      |||.:...|:.|..:|...||..||...
 Worm   228 ------------ERSG--SRDRRQDSYRNGG------GNDRDRRESSGGFRDNRGGGGGFGGGGR 272

  Fly   491 SSGNNYSGGGGSSNLGYNAYSSSGGMGGGNGGVGVDGNDYNTGNPLDVYGGGSNVG-NSNVGSAN 554
            ...|:.||||     ||......||..||:.|    |:.|:|       ||||..| .|..||:.
 Worm   273 DRFNDRSGGG-----GYGGDRDRGGDRGGDRG----GSRYST-------GGGSGGGYRSGGGSSG 321

  Fly   555 AVGASRKSD 563
            ..|..|..|
 Worm   322 GGGGGRYGD 330

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
rump	NP_649899.1	PABP-1234	48..435	CDD:130689	33/203 (16%)
		RRM1_hnRNPM_like	58..133	CDD:409819
		RRM2_hnRNPM_like	234..307	CDD:409820	21/72 (29%)
		RRM_SF	565..629	CDD:473069
rnp-7	NP_498565.2	U1snRNP70_N	4..95	CDD:432406
		RRM_snRNP70	103..192	CDD:409682	24/90 (27%)