Sequence 1: | NP_649899.1 | Gene: | rump / 41138 | FlyBaseID: | FBgn0267790 | Length: | 632 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_496718.1 | Gene: | tiar-2 / 174909 | WormBaseID: | WBGene00012904 | Length: | 434 | Species: | Caenorhabditis elegans |
Alignment Length: | 539 | Identity: | 115/539 - (21%) |
---|---|---|---|
Similarity: | 175/539 - (32%) | Gaps: | 197/539 - (36%) |
- Green bases have known domain annotations that are detailed below.
Fly 37 GAGSQGGGVAARDRSR--ERRNCR----------VYISNIPYDYRWQDLKDLFRRIVGSIEYVQL 89
Fly 90 FFDESGKARGCGIVEFKDPENVQKALEKMNRYEVNGRELVVKEDH----------GEQRDQYGRI 144
Fly 145 VRDGGGGGGGGGGVQGGNGGNNGGGGGGGRDHMDDRDRGFSRRDDDRLSGRNNFNMMSNDYNNSS 209
Fly 210 NYNLYGLSASFLESLGISGPLHNKVFVANLDYKVDNKKLKQVFKLAGKVQSVDLSLDKEGN-SRG 273
Fly 274 FAVIEYDHPVEAVQAISMLDRQMLFDRRMTVRLD---RIPDKN--EGIKLPEGLGGVGIGLGPNG 333
Fly 334 EPLRDVAHNLPNGGQSQGQLLGNAQQGSQLGSVGSQPNSSAVSNATTNLLNNLTGVMFGNHAAVQ 398
Fly 399 PSPV-------APVQKPSLGNNTGSGGLNLNNLNPSILAAVVGNLGNQGGNLSNPLLSSSLSNLG 456
Fly 457 LNLGNSGNDDNLPPSNVGLSNNYSSGGTGGGNSYSSG-NNYSGGGGSSNLGYNAYSS-------- 512
Fly 513 -SGGMGGGNGGVGVDGNDY 530 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
rump | NP_649899.1 | PABP-1234 | 48..435 | CDD:130689 | 77/421 (18%) |
RRM1_hnRNPM_like | 58..133 | CDD:240831 | 20/84 (24%) | ||
RRM2_hnRNPM_like | 234..307 | CDD:240832 | 21/73 (29%) | ||
RRM | <543..>631 | CDD:223796 | |||
RRM_SF | 565..630 | CDD:302621 | |||
tiar-2 | NP_496718.1 | RRM | 36..321 | CDD:223796 | 76/425 (18%) |
RRM_SF | 42..113 | CDD:302621 | 22/78 (28%) | ||
RRM_SF | 133..207 | CDD:302621 | 21/75 (28%) | ||
RRM3_TIA1_like | 256..326 | CDD:240800 | 12/80 (15%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0724 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |