Protein Alignment rump and tiar-2

DIOPT Version :10

• Sequence 1: NP_649899.1
• Gene: rump / 41138
• FlyBaseID: FBgn0267790
• Length: 632
• Species: Drosophila melanogaster
• Sequence 2: NP_496718.1
• Gene: tiar-2 / 174909
• WormBaseID: WBGene00012904
• Length: 434
• Species: Caenorhabditis elegans
• Alignment Length: 539
• Identity: 115/539 - (21%)
• Similarity: 175/539 - (32%)
• Gaps: 197/539 - (36%)

  Fly    37 GAGSQGGGVAARDRSR--ERRNCR----------VYISNIPYDYRWQDLKDLFRRIVGSIEYVQL 89
            |.|..|.|...|..:|  ||...:          ::::|:......:.|..||.:| |::...::
 Worm     8 GGGEDGDGFNPRVHARIAEREGFQLASGSEDPRTLFVANLDPAITDEFLATLFNQI-GAVMKAKI 71

  Fly    90 FFDESGKARGCGIVEFKDPENVQKALEKMNRYEVNGRELVVKEDH----------GEQRDQYGRI 144
            .|:  |.......|||.|......||:..     |||||:.||.|          ||.|
 Worm    72 IFE--GLNDPYAFVEFSDHNQATLALQSH-----NGRELLEKEMHVTWAFEPREPGENR------ 123

  Fly   145 VRDGGGGGGGGGGVQGGNGGNNGGGGGGGRDHMDDRDRGFSRRDDDRLSGRNNFNMMSNDYNNSS 209
                                                    |:.:..|
 Worm   124 ----------------------------------------SKPETSR------------------ 130

  Fly   210 NYNLYGLSASFLESLGISGPLHNKVFVANLDYKVDNKKLKQVFKLAGKVQSVDLSLDKEGN-SRG 273
                                 |..|||.:|..::|:.||::.|...|:|....:..|...| .:|
 Worm   131 ---------------------HFHVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKG 174

  Fly   274 FAVIEYDHPVEAVQAISMLDRQMLFDRRMTVRLD---RIPDKN--EGIKLPEGLGGVGIGLGPNG 333
            :..:.|....:|.:||..::...|  .|.|:|.:   |.||::  .|....:..||.|.|
 Worm   175 YGFVSYPRREDAERAIDEMNGAWL--GRRTIRTNWATRKPDEDGERGGDRGDRRGGGGGG----- 232

  Fly   334 EPLRDVAHNLPNGGQSQGQLLGNAQQGSQLGSVGSQPNSSAVSNATTNLLNNLTGVMFGNHAAVQ 398
               ||..||  ...::..::.                |.:|..|         |.|..||.|.:.
 Worm   233 ---RDRYHN--QSEKTYDEIF----------------NQAAADN---------TSVYVGNIANLG 267

  Fly   399 PSPV-------APVQKPSLGNNTGSGGLNLNNLNPSILAAVVGNLGNQGGNLSNPLLSSSLSNLG 456
            ...:       .|:.:.......|...:.......:..|.|..|..:.||.:           :.
 Worm   268 EDEIRRAFDRFGPINEVRTFKIQGYAFVKFETKESAARAIVQMNNADIGGQI-----------VR 321

  Fly   457 LNLGNSGNDDNLPPSNVGLSNNYSSGGTGGGNSYSSG-NNYSGGGGSSNLGYNAYSS-------- 512
            .:.|.||  |:..||..|      |||.||..:|..| .|..|||||...|.:.:|:
 Worm   322 CSWGKSG--DSGKPSERG------SGGGGGSGNYGYGYGNSGGGGGSGGPGNSQFSNFNQRPPPS 378

  Fly   513 -SGGMGGGNGGVGVDGNDY 530
             :||.|||:||   ..|.|
 Worm   379 GNGGSGGGSGG---QNNQY 394

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
rump	NP_649899.1	PABP-1234	48..435	CDD:130689	77/421 (18%)
		RRM1_hnRNPM_like	58..133	CDD:409819	20/84 (24%)
		RRM2_hnRNPM_like	234..307	CDD:409820	21/73 (29%)
		RRM_SF	565..629	CDD:473069
tiar-2	NP_496718.1	PABP-1234	41..>317	CDD:130689	74/405 (18%)
		RRM_SF	133..207	CDD:473069	21/75 (28%)
		RRM3_TIA1_like	256..325	CDD:409790	12/79 (15%)