Protein Alignment rump and rsp-1

DIOPT Version :10

• Sequence 1: NP_649899.1
• Gene: rump / 41138
• FlyBaseID: FBgn0267790
• Length: 632
• Species: Drosophila melanogaster
• Sequence 2: NP_496442.1
• Gene: rsp-1 / 174748
• WormBaseID: WBGene00004698
• Length: 312
• Species: Caenorhabditis elegans
• Alignment Length: 260
• Identity: 68/260 - (26%)
• Similarity: 101/260 - (38%)
• Gaps: 61/260 - (23%)

  Fly    58 RVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESGKARGCGIVEFKDPENVQKALEKMNRYE 122
            |:||..:......:|::..||. .|.|..|.|       ..|.|.|||.|..:.:.|:..:|..|
 Worm     4 RIYIGRLTSRVSEKDIEHFFRG-YGQIRDVLL-------KNGFGFVEFDDKRDAEDAVHDLNGKE 60

  Fly   123 VNGRELVVKEDHGEQRDQYGRIVRDGGG--GGGGGGGVQGGNGGNNGGGGGGGRDHMDDRDRGFS 185
            :.|..:::  |:.:.        |.|||  ||.||||..|....:..||||||||..|..|||..
 Worm    61 LGGERVIL--DYSKP--------RGGGGDRGGFGGGGRGGARVSSYSGGGGGGRDRFDRYDRGPP 115

  Fly   186 RRDDDRLSGRNNFNMMSNDYNNSSNYNLYGLSASFLESLGISGPLHNKVFVANLDYKVDNKKLKQ 250
            ||:                       :.||...|          ..::|.|.||..::..:.||.
 Worm   116 RRE-----------------------SRYGRPYS----------TRHRVVVENLSSRISWQDLKD 147

  Fly   251 VFKLAGKVQSVDLSLDKEGNSRGFAVIEYDHPVEAVQAISMLDRQMLFDRRMTVRLDRIPDKNEG 315
            ..:..| |:.......|..|.   |::.:..|.:..:.|...|...|..|::.:    |.|...|
 Worm   148 QVRRQG-VEPTYAEAHKRPNE---ALLCFATPSDLKRCIEKCDGMDLNGRKIKM----IDDSQAG 204

  Fly   316  315
             Worm   205  204

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
rump	NP_649899.1	PABP-1234	48..435	CDD:130689	68/260 (26%)
		RRM1_hnRNPM_like	58..133	CDD:409819	20/74 (27%)
		RRM2_hnRNPM_like	234..307	CDD:409820	16/72 (22%)
		RRM_SF	565..629	CDD:473069
rsp-1	NP_496442.1	RRM1_SRSF4_like	4..73	CDD:409774	21/78 (27%)
		RRM2_SRSF1_4_like	129..198	CDD:409776	16/76 (21%)