DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment rump and rsp-5

DIOPT Version :9

Sequence 1:	NP_649899.1	Gene:	rump / 41138	FlyBaseID:	FBgn0267790	Length:	632	Species:	Drosophila melanogaster
Sequence 2:	NP_495307.3	Gene:	rsp-5 / 174073	WormBaseID:	WBGene00004702	Length:	208	Species:	Caenorhabditis elegans

Alignment Length:	156	Identity:	34/156 - (21%)
Similarity:	55/156 - (35%)	Gaps:	50/156 - (32%)

- Green bases have known domain annotations that are detailed below.

  Fly    58 RVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESGKARGCGIVEFKDPENVQKALEKMNRYE 122
            |:|:..|||:.|.:|: :.|.:..|.|..:.:.:       |...|:|:|..:.:.|...::...
Worm     3 RLYLGKIPYNARERDV-ERFLKGYGKINNISMKY-------GFAFVDFEDSRDAEDACHDLDGKT 59

  Fly   123 VNG--RELVVKEDHGEQRDQYGRIVRDGGGGGGGGGGVQGGNGGNNGGGGGG------------- 172
            :.|  ..|||:...|:.|                         ||:..|...
Worm    60 MEGSSMRLVVEMARGKPR-------------------------GNDRHGSRSPRRRSRSPRRRSR 99

  Fly   173 --GRDHMDDRDRGFSRRDDDRLSGRN 196
              .|.....|||..|||...|.|.|:
Worm   100 TPPRRRSRSRDRKRSRRSRSRSSSRS 125

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
rump	NP_649899.1	PABP-1234	48..435	CDD:130689	34/156 (22%)
		RRM1_hnRNPM_like	58..133	CDD:240831	19/76 (25%)
		RRM2_hnRNPM_like	234..307	CDD:240832
		RRM	<543..>631	CDD:223796
		RRM_SF	565..630	CDD:302621
rsp-5	NP_495307.3	RRM	<3..>77	CDD:223796	20/81 (25%)
rsp-5	NP_495307.3	RRM_SF	3..74	CDD:302621	19/78 (24%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910