Sequence 1: | NP_649899.1 | Gene: | rump / 41138 | FlyBaseID: | FBgn0267790 | Length: | 632 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001293135.1 | Gene: | CSTF2 / 1478 | HGNCID: | 2484 | Length: | 597 | Species: | Homo sapiens |
Alignment Length: | 520 | Identity: | 94/520 - (18%) |
---|---|---|---|
Similarity: | 153/520 - (29%) | Gaps: | 211/520 - (40%) |
- Green bases have known domain annotations that are detailed below.
Fly 44 GVAARDRSRERRNCRVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFD-ESGKARGCGIVEFKD 107
Fly 108 PENVQKALEKMNRYEVNGRELVVKEDHGEQRDQYGRIVRDGGGGGGGGGGVQGGNGGNNGGGGGG 172
Fly 173 GRDHMDDRDRGFSRRDDDRLSGRNNFNMMSNDYNNSSNYNLYGLSASFLESLGISGPLHNKVFVA 237
Fly 238 NLDYKVDNKKLKQVFKLAGKVQSVDLSLDKEGNSRGFAVIEYDHPVEAVQAISMLDRQMLFDRRM 302
Fly 303 TVRLDRIPDKNEGIKLPEGLGGVGIGLGPNGEPLRDVAHNLPNGGQSQGQLLGNAQQGSQLGSVG 367
Fly 368 SQPNSSAVS-NATTNLLNNLTGVMFGNHAAVQPSPVAPVQKPSLGNNTGSG-GLNLNNLNPSILA 430
Fly 431 AVVGNLGNQGGNLSNPLLSSSLSNLGLNLGNSGNDDNLPPSNVGLSNNYSSGGTGGGNSYSSGNN 495
Fly 496 YSGGGGSSNLGYNAYSSSGGMGGGNGGVGVDGNDYNTGNPLDVYGGGSNVGNSNVGSANAVGASR 560
Fly 561 560 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
rump | NP_649899.1 | PABP-1234 | 48..435 | CDD:130689 | 68/389 (17%) |
RRM1_hnRNPM_like | 58..133 | CDD:240831 | 27/75 (36%) | ||
RRM2_hnRNPM_like | 234..307 | CDD:240832 | 6/72 (8%) | ||
RRM | <543..>631 | CDD:223796 | 5/18 (28%) | ||
RRM_SF | 565..630 | CDD:302621 | |||
CSTF2 | NP_001293135.1 | PABP-1234 | 4..352 | CDD:130689 | 93/519 (18%) |
RRM_CSTF2_CSTF2T | 18..92 | CDD:241115 | 29/132 (22%) | ||
CSTF2_hinge | 112..191 | CDD:373015 | 16/151 (11%) | ||
PRK14718 | <412..>469 | CDD:173181 | |||
CSTF_C | 553..593 | CDD:373006 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0724 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |