DRSC/TRiP Functional Genomics Resources

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Protein Alignment rump and SF2

DIOPT Version :10

Sequence 1:NP_649899.1 Gene:rump / 41138 FlyBaseID:FBgn0267790 Length:632 Species:Drosophila melanogaster
Sequence 2:XP_061518009.1 Gene:SF2 / 1275237 VectorBaseID:AGAMI1_006683 Length:234 Species:Anopheles gambiae


Alignment Length:243 Identity:58/243 - (23%)
Similarity:92/243 - (37%) Gaps:72/243 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 SRERRNCRVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESGKARGCGIVEFKDPENVQKAL 115
            |..|..||:|:.|:|.|.|.:|::|||.:. |.:.:|.|   ::.:......|||:|..:...|:
Mosquito     2 SHGRNECRIYVGNLPPDIRTKDIQDLFHKF-GKVTFVDL---KNRRGPPFAFVEFEDARDADDAV 62

  Fly   116 EKMNRYEVNGRELVVKEDHGEQRDQYGRIVRDGGGGGGGGGGVQGGNGGNNGGGGGGGRDHMDDR 180
            :..:.|:.:|..|         |.::.|     |||.|...|.:.||...|..||       |..
Mosquito    63 KARDGYDYDGYRL---------RVEFPR-----GGGPGSYRGSRQGNSDRNSRGG-------DRN 106

  Fly   181 DRGFSRRDDDRLSGRNNFNMMSNDYNNSSNYNLYGLSASFLESLGISGPLHNKVFVANLDYKVDN 245
            :||...|       |:.|.:|.....:|.::                                  
Mosquito   107 NRGPPAR-------RSQFRVMVTGLPSSGSW---------------------------------- 130

  Fly   246 KKLKQVFKLAGKVQSVDLSLDKEGNSRGFAVIEYDHPVEAVQAISMLD 293
            :.||...:.||.|...|:..|      |..|:|:....:...||..||
Mosquito   131 QDLKDHMREAGDVCFADVYKD------GTGVVEFLRHEDMKYAIKKLD 172

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rumpNP_649899.1 PABP-1234 48..435 CDD:130689 58/243 (24%)
RRM1_hnRNPM_like 58..133 CDD:409819 21/74 (28%)
RRM2_hnRNPM_like 234..307 CDD:409820 14/60 (23%)
RRM_SF 565..629 CDD:473069
SF2XP_061518009.1 None
Blue background indicates that the domain is not in the aligned region.

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