DRSC/TRiP Functional Genomics Resources

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Protein Alignment rump and LOC11176155

DIOPT Version :10

Sequence 1:NP_649899.1 Gene:rump / 41138 FlyBaseID:FBgn0267790 Length:632 Species:Drosophila melanogaster
Sequence 2:XP_003436593.1 Gene:LOC11176155 / 11176155 VectorBaseID:AGAMI1_003599 Length:420 Species:Anopheles gambiae


Alignment Length:339 Identity:71/339 - (20%)
Similarity:114/339 - (33%) Gaps:97/339 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 VYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESGKAR-----GCGIVEFKDPENVQKALEKM 118
            ||:.|:|......||.:|| :..|.||.|..:    |:.|     ....:.|:...:.::| .|.
Mosquito    38 VYVGNLPKQIMLTDLIELF-KYAGRIERVAWY----GEHRTDINTKVAFIRFRHSRHAKEA-AKW 96

  Fly   119 NRYEVNGRELVVKEDHGEQ-------------RDQ----------------YGRIVRDGGGGGGG 154
            :|.......|:|.:...:|             ||.                ||.::...|....|
Mosquito    97 DRIRYQDSILIVMQIFKDQWFDMSVSIMVRNIRDDTTDWQLYEAFRRFGKIYGILIPTHGTAYVG 161

  Fly   155 ---GGGVQGG-NGGNNGGGGGGGRDHMDDRDRGFSRRD-------------------DDRL---- 192
               ....|.. ...||...|...|..|..|:....:.|                   |::|    
Mosquito   162 FYYEAETQCALEMNNNMFNGNRMRVEMLRRNLPLQQIDIFDITKNEVRLLRDMLLEVDEKLEQFY 226

  Fly   193 -SGRNNFNMMSNDY-----------------------NNSSNYNLYGLSASFLESLGISGPLHNK 233
             :....||..|.||                       ::||...:...||:.:..:.......|:
Mosquito   227 SAYDEAFNYSSKDYRRWKRKRRRVTPLLSDSSSSSESSSSSVSEISNRSATEVRRILCGSNEENR 291

  Fly   234 ---VFVANLDYKVDNKKLKQVFKLAGKVQSVDLSLDKEGN-SRGFAVIEYDHPVEAVQAISMLDR 294
               :|..|.|  ...|.|.::|...|.|:.:.|..|.:.| |||::.|.:.|..:|.:|...|:.
Mosquito   292 CLGIFGMNPD--TTEKTLMKLFSRYGHVKDIKLIYDGKTNVSRGYSFIYFKHASDARRAQRKLNG 354

  Fly   295 QMLFDRRMTVRLDR 308
            .||..|::.|...|
Mosquito   355 TMLEGRKVRVDFSR 368

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rumpNP_649899.1 PABP-1234 48..435 CDD:130689 71/339 (21%)
RRM1_hnRNPM_like 58..133 CDD:409819 20/78 (26%)
RRM2_hnRNPM_like 234..307 CDD:409820 23/73 (32%)
RRM_SF 565..629 CDD:473069
LOC11176155XP_003436593.1 PABP-1234 38..>381 CDD:130689 71/339 (21%)
RRM_SF 123..187 CDD:409669 11/63 (17%)
RRM_SF 290..367 CDD:473069 24/78 (31%)
Blue background indicates that the domain is not in the aligned region.

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