Sequence 1: | NP_649899.1 | Gene: | rump / 41138 | FlyBaseID: | FBgn0267790 | Length: | 632 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001345982.1 | Gene: | Cstf2 / 108062 | MGIID: | 1343054 | Length: | 603 | Species: | Mus musculus |
Alignment Length: | 456 | Identity: | 95/456 - (20%) |
---|---|---|---|
Similarity: | 147/456 - (32%) | Gaps: | 157/456 - (34%) |
- Green bases have known domain annotations that are detailed below.
Fly 44 GVAARDRSRERRNCRVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFD-ESGKARGCGIVEFKD 107
Fly 108 PENVQKALEKMNRYEVNGRELVVKEDHGEQRDQYGRIVRDGGGGGGGGGGVQGGNGGNNGGGGGG 172
Fly 173 GRDHMDDRDRGFSRRDDDRLSGRNNFNMMSNDYNNSSNYNLYGLSASFLESLGISGPLHNKVF-- 235
Fly 236 -------VANLDYKVDNKKLKQVFKLAGKVQSVDLSLDKEGNSR-------GFAVIEYDHPVEAV 286
Fly 287 Q---AISMLDRQMLFDRRMTVRLDRIPDKNEGIKLPEGLGGVGIGLGPNGEPLRDVAHNLPNGGQ 348
Fly 349 SQGQLLGN--------AQQGSQLGSV-----------GSQPNSSA---VSNATTNLLNNLTGVMF 391
Fly 392 GNHAAVQPSPVAPVQKPSL----GNNTGSGGLNLNNLNPSILAAVVGNLGN----------QGGN 442
Fly 443 L 443 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
rump | NP_649899.1 | PABP-1234 | 48..435 | CDD:130689 | 89/432 (21%) |
RRM1_hnRNPM_like | 58..133 | CDD:240831 | 27/75 (36%) | ||
RRM2_hnRNPM_like | 234..307 | CDD:240832 | 11/91 (12%) | ||
RRM | <543..>631 | CDD:223796 | |||
RRM_SF | 565..630 | CDD:302621 | |||
Cstf2 | NP_001345982.1 | RRM | <7..332 | CDD:330708 | 85/423 (20%) |
RRM_CSTF2_CSTF2T | 18..92 | CDD:241115 | 29/132 (22%) | ||
CSTF2_hinge | 113..191 | CDD:316816 | 8/77 (10%) | ||
Rnc | <418..>475 | CDD:330804 | |||
CSTF_C | 559..599 | CDD:316795 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0724 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |