DRSC/TRiP Functional Genomics Resources

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Protein Alignment rump and Cstf2

DIOPT Version :9

Sequence 1:NP_649899.1 Gene:rump / 41138 FlyBaseID:FBgn0267790 Length:632 Species:Drosophila melanogaster
Sequence 2:NP_001345982.1 Gene:Cstf2 / 108062 MGIID:1343054 Length:603 Species:Mus musculus


Alignment Length:456 Identity:95/456 - (20%)
Similarity:147/456 - (32%) Gaps:157/456 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 GVAARDRSRERRNCRVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFD-ESGKARGCGIVEFKD 107
            |:..||.:.:|....|::.||||:...:.|||:|.. ||.:...:|.:| |:||.:|.|..|::|
Mouse     3 GLPVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSE-VGPVVSFRLVYDRETGKPKGYGFCEYQD 66

  Fly   108 PENVQKALEKMNRYEVNGRELVVKEDHGEQRDQYGRIVRDGGGGGGGGGGVQGGNGGNNGGGGGG 172
            .|....|:..:|..|.:||.|                                            
Mouse    67 QETALSAMRNLNGREFSGRAL-------------------------------------------- 87

  Fly   173 GRDHMDDRDRGFSRRDDDRLSGRNNFNMMSNDYNNSSNYNLYGLSASFLESLGISGPLHNKVF-- 235
                          |.|:..|.:|.                     ..|:|||...|:....:  
Mouse    88 --------------RVDNAASEKNK---------------------EELKSLGTGAPVIESPYGE 117

  Fly   236 -------VANLDYKVDNKKLKQVFKLAGKVQSVDLSLDKEGNSR-------GFAVIEYDHPVEAV 286
                   ..::...|.:...:|:|:|..:::....:..:|..:.       .:|:::....:..|
Mouse   118 SISPEDAPESISKAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIV 182

  Fly   287 Q---AISMLDRQMLFDRRMTVRLDRIPDKNEGIKLPEGLGGVGIGLGPNGEPLRDVAHNLPNGGQ 348
            .   |:.:|.||           ..||....|  .|:.:...|.|.|||      |:.|..|...
Mouse   183 DPEIALKILHRQ-----------TNIPTLISG--NPQPVHVAGPGSGPN------VSMNQQNPQA 228

  Fly   349 SQGQLLGN--------AQQGSQLGSV-----------GSQPNSSA---VSNATTNLLNNLTGVMF 391
            .|.|.||.        ..|.|..|.|           |..|.|.|   |..|...:.......|.
Mouse   229 PQAQSLGGMHVNGAPPMMQASMPGGVPAPVQMAAAVGGPGPGSLAPAGVMQAQVGMQGAGPVPME 293

  Fly   392 GNHAAVQPSPVAPVQKPSL----GNNTGSGGLNLNNLNPSILAAVVGNLGN----------QGGN 442
            .....:|.|||.|....|:    |..|.....::....||:|  |.|.|..          :||.
Mouse   294 RGQGTLQHSPVGPAGPASIERVQGQRTWMIWASVRGSTPSLL--VSGGLDGIAVCDAPNDPRGGT 356

  Fly   443 L 443
            |
Mouse   357 L 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rumpNP_649899.1 PABP-1234 48..435 CDD:130689 89/432 (21%)
RRM1_hnRNPM_like 58..133 CDD:240831 27/75 (36%)
RRM2_hnRNPM_like 234..307 CDD:240832 11/91 (12%)
RRM <543..>631 CDD:223796
RRM_SF 565..630 CDD:302621
Cstf2NP_001345982.1 RRM <7..332 CDD:330708 85/423 (20%)
RRM_CSTF2_CSTF2T 18..92 CDD:241115 29/132 (22%)
CSTF2_hinge 113..191 CDD:316816 8/77 (10%)
Rnc <418..>475 CDD:330804
CSTF_C 559..599 CDD:316795
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0724
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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