DRSC/TRiP Functional Genomics Resources

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Protein Alignment rump and srsf4

DIOPT Version :10

Sequence 1:NP_649899.1 Gene:rump / 41138 FlyBaseID:FBgn0267790 Length:632 Species:Drosophila melanogaster
Sequence 2:XP_004911639.2 Gene:srsf4 / 100038227 XenbaseID:XB-GENE-493077 Length:741 Species:Xenopus tropicalis


Alignment Length:214 Identity:54/214 - (25%)
Similarity:83/214 - (38%) Gaps:48/214 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SMDASNSV----------------ESREKERD-RRGRGARGSRFTDADGNGNGAGSQGGGVAARD 49
            |.||.::|                .:|...|| |.|.|.|            ..||...|...|.
 Frog    50 SRDAEDAVYEMNGRELCGERVIVEHARAPRRDIRSGYGYR------------KGGSDKYGPPVRT 102

  Fly    50 RSRERRNCRVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESGKARGCGIVEFKDPENVQKA 114
            ..|.|      :.|:.....|||||| |.|..|.:.|.    |...:.:..|::||:...::::|
 Frog   103 MYRLR------VENLSSRCSWQDLKD-FMRQAGEVTYA----DAHQRRQNEGVIEFRSYSDMRRA 156

  Fly   115 LEKMNRYEVNGRELVVKEDHGEQRDQYGRIVRDGGGGGGGGGGVQGGNGGNNGGGGGGGRDHMDD 179
            |||::..|:|||::.:.||....|::       |.............:..::.......|.|...
 Frog   157 LEKLDGSEINGRKIQLVEDRAGSRNK-------GSSSRSRSRSRSRRSRSSHSRSRSRSRSHSRS 214

  Fly   180 RDRGFSR-RDDDRLSGRNN 197
            |.|..|| |..:|.|.|::
 Frog   215 RQRERSRSRSKERRSSRSH 233

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rumpNP_649899.1 PABP-1234 48..435 CDD:130689 40/151 (26%)
RRM1_hnRNPM_like 58..133 CDD:409819 23/74 (31%)
RRM2_hnRNPM_like 234..307 CDD:409820
RRM_SF 565..629 CDD:473069
srsf4XP_004911639.2 RRM_SF 6..77 CDD:473069 4/26 (15%)
RRM_SF 104..176 CDD:473069 26/82 (32%)
PTZ00121 <248..716 CDD:173412
PRK12678 255..>469 CDD:237171
Blue background indicates that the domain is not in the aligned region.

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