DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment rump and srsf4

DIOPT Version :9

Sequence 1:	NP_649899.1	Gene:	rump / 41138	FlyBaseID:	FBgn0267790	Length:	632	Species:	Drosophila melanogaster
Sequence 2:	XP_004911639.2	Gene:	srsf4 / 100038227	XenbaseID:	XB-GENE-493077	Length:	741	Species:	Xenopus tropicalis

Alignment Length:	214	Identity:	54/214 - (25%)
Similarity:	83/214 - (38%)	Gaps:	48/214 - (22%)

- Green bases have known domain annotations that are detailed below.

  Fly     2 SMDASNSV----------------ESREKERD-RRGRGARGSRFTDADGNGNGAGSQGGGVAARD 49
            |.||.::|                .:|...|| |.|.|.|            ..||...|...|.
Frog    50 SRDAEDAVYEMNGRELCGERVIVEHARAPRRDIRSGYGYR------------KGGSDKYGPPVRT 102

  Fly    50 RSRERRNCRVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESGKARGCGIVEFKDPENVQKA 114
            ..|.|      :.|:.....|||||| |.|..|.:.|.    |...:.:..|::||:...::::|
Frog   103 MYRLR------VENLSSRCSWQDLKD-FMRQAGEVTYA----DAHQRRQNEGVIEFRSYSDMRRA 156

  Fly   115 LEKMNRYEVNGRELVVKEDHGEQRDQYGRIVRDGGGGGGGGGGVQGGNGGNNGGGGGGGRDHMDD 179
            |||::..|:|||::.:.||....|::       |.............:..::.......|.|...
Frog   157 LEKLDGSEINGRKIQLVEDRAGSRNK-------GSSSRSRSRSRSRRSRSSHSRSRSRSRSHSRS 214

  Fly   180 RDRGFSR-RDDDRLSGRNN 197
            |.|..|| |..:|.|.|::
Frog   215 RQRERSRSRSKERRSSRSH 233

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
rump	NP_649899.1	PABP-1234	48..435	CDD:130689	40/151 (26%)
		RRM1_hnRNPM_like	58..133	CDD:240831	23/74 (31%)
		RRM2_hnRNPM_like	234..307	CDD:240832
		RRM	<543..>631	CDD:223796
		RRM_SF	565..630	CDD:302621
srsf4	XP_004911639.2	RRM_SF	6..77	CDD:418427	4/26 (15%)
		RRM_SF	104..176	CDD:418427	26/82 (32%)
		ser_rich_anae_1	<249..>456	CDD:411418
		PRK12678	352..>573	CDD:237171
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910