DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoL and RHO5

DIOPT Version :9

Sequence 1:NP_001247003.1 Gene:RhoL / 41136 FlyBaseID:FBgn0014380 Length:214 Species:Drosophila melanogaster
Sequence 2:NP_014219.1 Gene:RHO5 / 855541 SGDID:S000005124 Length:331 Species:Saccharomyces cerevisiae


Alignment Length:227 Identity:85/227 - (37%)
Similarity:124/227 - (54%) Gaps:50/227 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 RPLKITIVGDGMVGKTCMLITYTRNEFPEEYIPTVFDNHACNIAV-------------------- 78
            |.:|..|:|||.||||.:||:||.|.||.:|:||||||::..||:                    
Yeast     2 RSIKCVIIGDGAVGKTSLLISYTTNSFPTDYVPTVFDNYSTTIAIPNGTASSPLELDNGNDKRGS 66

  Fly    79 ----------DDRDYNLTLWDTAGQEDYERLRPLSYPSTNCFLLCYSISSRTSFENVKSKWWPEI 133
                      |.:.|.:.||||||||||:|||||.||.|:.||:|:|:|...||.||..||.||:
Yeast    67 LSSASSSPSTDRKLYKINLWDTAGQEDYDRLRPLCYPQTDIFLICFSVSEHASFANVTEKWLPEL 131

  Fly   134 RHFS-----------AHVPVVLVGTKLDLR-IPNSEK--------FVTTQEGKKMRKEIHAFNLV 178
            :..|           ...|::|||||.||| .|.::|        :|:.:|..::.:........
Yeast   132 KQTSNIEGTSLYTKLGKYPILLVGTKSDLRDDPATQKKLQEANSDYVSQEEIDELVQRCGFMGYT 196

  Fly   179 ECSAKKKQNLQQVFEEAVRAVERKPKTTSKQS 210
            ||||..:..:::|||:|||....:|::.:::|
Yeast   197 ECSAATQAGVREVFEQAVRYAIYEPESPNQKS 228

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoLNP_001247003.1 Rho 36..198 CDD:206641 81/211 (38%)
RHO 38..202 CDD:197554 81/213 (38%)
RHO5NP_014219.1 RHO 6..220 CDD:197554 81/213 (38%)
PBP1 <161..>316 CDD:227507 17/68 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0393
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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