DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoL and Rhobtb1

DIOPT Version :9

Sequence 1:NP_001247003.1 Gene:RhoL / 41136 FlyBaseID:FBgn0014380 Length:214 Species:Drosophila melanogaster
Sequence 2:NP_001074816.1 Gene:Rhobtb1 / 69288 MGIID:1916538 Length:695 Species:Mus musculus


Alignment Length:201 Identity:61/201 - (30%)
Similarity:100/201 - (49%) Gaps:39/201 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 RP----LKITIVGDGMVGKTCML------ITYTRNEFPEEYIPTVF--DNH-AC-------NIAV 78
            ||    :|..:|||..||||.::      .|.|:.:....::|||:  |.: .|       ...|
Mouse     9 RPNVETIKCVVVGDNAVGKTRLICARACNTTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVV 73

  Fly    79 DDRDYNLTLWDTAGQEDYERLRPLSYPSTNCFLLCYSISSRTSFENVKSKWWPEIRHFSAHVPVV 143
            |:...:|.||||.|  |:.:.|..:|..::..:||:||::..|..:||:.|:.||:||....|||
Mouse    74 DEVSISLRLWDTFG--DHHKDRRFAYGRSDVVVLCFSIANPNSLNHVKTMWYQEIKHFCPRTPVV 136

  Fly   144 LVGTKLDLRIPNSE----------------KFVTTQEGKKMRKEIHAFNLVECSAKKKQNLQQVF 192
            |||.:||||..:.|                ..:..::|:::.||: .....|.|...:..::.||
Mouse   137 LVGCQLDLRYADLEAVNRARRPLARPIKRGDILPPEKGREVAKEL-GIPYYETSVFDQFGIKDVF 200

  Fly   193 EEAVRA 198
            :.|:||
Mouse   201 DNAIRA 206

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoLNP_001247003.1 Rho 36..198 CDD:206641 57/193 (30%)
RHO 38..202 CDD:197554 58/193 (30%)
Rhobtb1NP_001074816.1 Rho-like 1..210 61/201 (30%)
RhoBTB 13..207 CDD:133275 59/197 (30%)
BTB_POZ 248..459 CDD:365784
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 325..351
BTB_POZ 464..589 CDD:365784
BACK_RHOBTB1 592..691 CDD:350605
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0393
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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