DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoL and rhof

DIOPT Version :9

Sequence 1:NP_001247003.1 Gene:RhoL / 41136 FlyBaseID:FBgn0014380 Length:214 Species:Drosophila melanogaster
Sequence 2:NP_001018478.1 Gene:rhof / 573655 ZFINID:ZDB-GENE-050522-280 Length:209 Species:Danio rerio


Alignment Length:194 Identity:84/194 - (43%)
Similarity:124/194 - (63%) Gaps:16/194 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 LKITIVGDGMVGKTCMLITYTRNEFPEEYIPTVFDNHACNIAVDDRDYNLTLWDTAGQEDYERLR 100
            |||.|||||..|||.:|:.|.:.:|||:|.|:|||.:...::...:|..|.|:||||||||:|||
Zfish    17 LKIVIVGDGGCGKTSLLMVYAKGDFPEKYAPSVFDKYVTTVSYGGKDIQLNLYDTAGQEDYDRLR 81

  Fly   101 PLSYPSTNCFLLCYSISSRTSFENVKSKWWPEIRHFSAHVPVVLVGTKLDLRIPNSEKF------ 159
            ||||...|..|:||.:::.|||:|||.||:||:|||....|::|:..|.||| .:.||.      
Zfish    82 PLSYQDVNIVLICYDVTNPTSFDNVKIKWYPEVRHFCRDAPIILISCKTDLR-KDKEKMRRLKAL 145

  Fly   160 ----VTTQEGKKMRKEIHAFNLVECSAKKKQNLQQVFEEAV-RAVERKPK----TTSKQSCKIL 214
                :|...|::.:||::|...:|||||.::|::.:|.||. ||:..:.|    :..|:.|.:|
Zfish   146 DQAPITYLLGEQTQKEMNAEIYLECSAKYRENVEDIFREATKRALAARAKARHRSKKKKHCTVL 209

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoLNP_001247003.1 Rho 36..198 CDD:206641 78/172 (45%)
RHO 38..202 CDD:197554 78/174 (45%)
rhofNP_001018478.1 P-loop_NTPase 17..209 CDD:304359 83/192 (43%)
RHO 19..186 CDD:197554 75/167 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0393
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.900

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