DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoL and rnd1a

DIOPT Version :9

Sequence 1:NP_001247003.1 Gene:RhoL / 41136 FlyBaseID:FBgn0014380 Length:214 Species:Drosophila melanogaster
Sequence 2:NP_998019.3 Gene:rnd1a / 405780 ZFINID:ZDB-GENE-040630-6 Length:232 Species:Danio rerio


Alignment Length:191 Identity:62/191 - (32%)
Similarity:103/191 - (53%) Gaps:14/191 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 RPL----KITIVGDGMVGKTCMLITYTRNEFPEEYIPTVFDNHACNIAVDDRDYNLTLWDTAGQE 94
            :||    |:.:|||...|||.||....::.:||.|:||||:|:...:.::::...|:||||:|..
Zfish     8 QPLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLELEEQRVELSLWDTSGSP 72

  Fly    95 DYERLRPLSYPSTNCFLLCYSISSRTSFENVKSKWWPEIRHFSAHVPVVLVGTKLDLRIP----- 154
            .|:.:|||.|...:..|||:.||...:.|:...||..||..|.....::|||.|.|||..     
Zfish    73 YYDNVRPLCYSDADAVLLCFDISRPDTVESSLKKWKAEIMDFCPSTRIILVGCKTDLRTDVCTLM 137

  Fly   155 --NSEKF--VTTQEGKKMRKEIHAFNLVECSA-KKKQNLQQVFEEAVRAVERKPKTTSKQS 210
              ::::.  ::.::|..:.|::.|...:|||| ..::::..||..|......|.:...|||
Zfish   138 ELSNQRLTPISHEQGTLLAKQVGAEVYLECSAFTSEKSIHSVFRSASLTCLNKLQPPIKQS 198

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoLNP_001247003.1 Rho 36..198 CDD:206641 57/175 (33%)
RHO 38..202 CDD:197554 55/173 (32%)
rnd1aNP_998019.3 P-loop_NTPase 1..232 CDD:304359 62/191 (32%)
RHO 16..190 CDD:197554 55/173 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0393
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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