DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoL and rhoq

DIOPT Version :9

Sequence 1:NP_001247003.1 Gene:RhoL / 41136 FlyBaseID:FBgn0014380 Length:214 Species:Drosophila melanogaster
Sequence 2:NP_956112.1 Gene:rhoq / 327510 ZFINID:ZDB-GENE-030131-5721 Length:205 Species:Danio rerio


Alignment Length:183 Identity:86/183 - (46%)
Similarity:130/183 - (71%) Gaps:9/183 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 LKITIVGDGMVGKTCMLITYTRNEFPEEYIPTVFDNHACNIAVDDRDYNLTLWDTAGQEDYERLR 100
            ||..:||||.|||||:|::|..:.|||||:|||||::|.::.|..:.|.|.|:||||||||:|||
Zfish    10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLR 74

  Fly   101 PLSYPSTNCFLLCYSISSRTSFENVKSKWWPEIRHFSAHVPVVLVGTKLDLR-IPNS-------- 156
            |||||.|:.||:|:|:.:..||:||:.:|.||::.::.::|.:|:||::||| .|.:        
Zfish    75 PLSYPMTDVFLICFSVVNPASFQNVREEWVPELQEYAPNIPYLLIGTQIDLRDDPKTIAKLNDVK 139

  Fly   157 EKFVTTQEGKKMRKEIHAFNLVECSAKKKQNLQQVFEEAVRAVERKPKTTSKQ 209
            ||.:.|::|:|:.|||.|...|||||..::.|:.||:||:.|:....|...|:
Zfish   140 EKPIVTEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILAPKKGALKR 192

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoLNP_001247003.1 Rho 36..198 CDD:206641 83/170 (49%)
RHO 38..202 CDD:197554 82/172 (48%)
rhoqNP_956112.1 P-loop_NTPase 10..183 CDD:304359 84/172 (49%)
RHO 12..185 CDD:197554 82/172 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0393
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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