DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RhoL and Cdc42

DIOPT Version :10

Sequence 1:NP_001247003.1 Gene:RhoL / 41136 FlyBaseID:FBgn0014380 Length:214 Species:Drosophila melanogaster
Sequence 2:XP_312505.3 Gene:Cdc42 / 1273521 VectorBaseID:AGAMI1_006983 Length:191 Species:Anopheles gambiae


Alignment Length:188 Identity:96/188 - (51%)
Similarity:130/188 - (69%) Gaps:9/188 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 LKITIVGDGMVGKTCMLITYTRNEFPEEYIPTVFDNHACNIAVDDRDYNLTLWDTAGQEDYERLR 100
            :|..:||||.|||||:||:||.|:||.||:||||||:|..:.:....|.|.|:||||||||:|||
Mosquito     4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 68

  Fly   101 PLSYPSTNCFLLCYSISSRTSFENVKSKWWPEIRHFSAHVPVVLVGTKLDLRIPNS--------- 156
            |||||.|:.||:|:|:.|.:||||||.||.|||.|.....|.:||||::|||..||         
Mosquito    69 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRDENSTLEKLAKNK 133

  Fly   157 EKFVTTQEGKKMRKEIHAFNLVECSAKKKQNLQQVFEEAVRAVERKPKTTSKQSCKIL 214
            :|.:|.::|:|:.||:.|...|||||..::.|:.||:||:.|....|:.|.|:.|:.|
Mosquito   134 QKPITLEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAILAALEPPEPTKKRKCRFL 191

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoLNP_001247003.1 Rho 36..198 CDD:206641 90/170 (53%)
Cdc42XP_312505.3 Cdc42 3..177 CDD:206664 91/172 (53%)

Return to query results.
Submit another query.