DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoL and Rnd2

DIOPT Version :9

Sequence 1:NP_001247003.1 Gene:RhoL / 41136 FlyBaseID:FBgn0014380 Length:214 Species:Drosophila melanogaster
Sequence 2:NP_033838.1 Gene:Rnd2 / 11858 MGIID:1338755 Length:227 Species:Mus musculus


Alignment Length:177 Identity:62/177 - (35%)
Similarity:101/177 - (57%) Gaps:20/177 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 KITIVGDGMVGKTCMLITYTRNEFPEEYIPTVFDNHACNIAVDDRDYNLTLWDTAGQEDYERLRP 101
            ||.:|||...|||.:|..:.::.:|..|:||||:|:..:..:|.|...|.:|||:|...|:.:||
Mouse     9 KIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRP 73

  Fly   102 LSYPSTNCFLLCYSISSRTSFENVKSKWWPEIRHFSAHVPVVLVGTKLDLR-------------- 152
            |:||.::..|:|:.||...:.::|..||..|.:.|..:..|||||.|||:|              
Mouse    74 LAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRL 138

  Fly   153 IPNSEKFVTTQEGKKMRKEIHAFNLVECSAK-KKQNLQQVFEEAVRA 198
            ||     ||.::|..:.|::.|.:.||||:: .:::::.||..|..|
Mouse   139 IP-----VTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVA 180

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoLNP_001247003.1 Rho 36..198 CDD:206641 61/175 (35%)
RHO 38..202 CDD:197554 61/176 (35%)
Rnd2NP_033838.1 Rnd2_Rho7 7..227 CDD:206736 62/177 (35%)
Effector region. /evidence=ECO:0000255 36..44 5/7 (71%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 186..227
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0393
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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