DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment alpha-Man-IIa and Man2c1

DIOPT Version :9

Sequence 1:NP_001262413.1 Gene:alpha-Man-IIa / 41126 FlyBaseID:FBgn0011740 Length:1109 Species:Drosophila melanogaster
Sequence 2:XP_006511557.1 Gene:Man2c1 / 73744 MGIID:1920994 Length:1106 Species:Mus musculus


Alignment Length:874 Identity:162/874 - (18%)
Similarity:285/874 - (32%) Gaps:274/874 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 VICSGCLLVFLSLYIILNFAAPAATQIKQPN-------YENIENKLHELE------NGLQEHGEE 62
            |.|:|.|.......|    |||...::.|.:       :.::.:.|.:||      .||.|  :.
Mouse   173 VACNGLLGAGKGSMI----AAPDPEKMFQLSQAKLAVFHRDVHSLLVDLELLLGVAKGLGE--DS 231

  Fly    63 MRNLRARLAETSNR----DDPIRP---PLKVARSPR-----PGQCQDVVQDVPNVDV-------- 107
            .|:.:|  ..|:|:    .||.:|   |...|.:.:     .|:.|..:..:.:..:        
Mouse   232 QRSFQA--LHTANQMVNICDPAQPETYPAAKALASKFFGQHGGESQHTIHAMGHCHIDTGVSRCT 294

  Fly   108 -------QMLELYDRMSFKDIDGGVWKQGWNIKYDPLKYNAHHKLKVFVVPHSHNDPGWIQTFEE 165
                   |:|.:..:|..:.:   ..:||              .:|:.:.|.:     |:..|:|
Mouse   295 SKCVFFSQLLAVLIQMQLRFL---TMEQG--------------LMKLDLRPRA-----WLWPFKE 337

  Fly   166 YYQHDTKHILSNALRHLHDNPEMKFI--------WAEISYFARFYHDLGENKKLQMKSIVKNGQL 222
            ..:...:. .|.|:..:..|.:..|.        |.:..|       .|.:.:||  .....||.
Mouse   338 TVRKCARS-WSTAVTLMEQNTDFIFACSQAQQLEWVKSQY-------PGLHARLQ--EFACRGQF 392

  Fly   223 EFVTGGWVMPDEANSHWRNVLLQLTEGQTWLKQFMNVTPTASWAIDPFGHSPTMPYILQKSGFKN 287
            ..|.|.||..|........::.|..:||.:..|......:..|..|.||:|..:|.|:|..|.|.
Mouse   393 VPVGGTWVEMDGNLPSGEAMVRQFLQGQNFFLQEFGKMCSEFWLPDTFGYSAQLPQIMQGCGIKR 457

  Fly   288 MLIQRTHYSVKKELAQQRQLEFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFK 352
            .|.|:..:::.......       ...|:....:.:..|..|..||                   
Mouse   458 FLTQKLSWNLVNSFPHH-------TFFWEGLDGSRVLVHFPPGDSY------------------- 496

  Fly   353 RMGSFGLSCPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQ 417
                 |:....:...:|:::.....|::              .:..|...||.......|..|  
Mouse   497 -----GMQGSVEEVLKTVTNNRDKGRTN--------------HSGFLFGFGDGGGGPTQTMLD-- 540

  Fly   418 RVNYERLFEHINSQAHFNVQAQFGTLQEYFDAVHQAERAGQAEFPTLSGDFFTYADRSDNYWSGY 482
              ..:||     |......:.|..:..:.|.|:.:    ...:..|..|:.|.      ...:|.
Mouse   541 --RLKRL-----SNTDGLPRVQLSSPGQLFTALER----DSGQLCTWVGELFL------ELHNGT 588

  Fly   483 YTSRPYHKRMDRVLMHYVRAAEMLSAWHSWDGMARIEE------RLEQARRELSLFQHHDGITGT 541
            ||:....|:.:|.....:...|:||:.    .:||..:      :|:...|.|.|.|.||.:||:
Mouse   589 YTTHAQLKKGNRECEQILHDVEVLSSL----ALARSAQFLYPAAQLQHLWRLLLLNQFHDVVTGS 649

  Fly   542 AKTHVVVDYEQRMQEALKACQMVMQQSVYRLLTKPSIYSPDFSFSYFTLDDSRWPGSGVEDSRTT 606
                              ..|:|.:.::                :|:  :|.|..|:.:..:...
Mouse   650 ------------------CIQLVAEDAM----------------NYY--EDIRSHGNPLLSAAAA 678

  Fly   607 IILGEDILPSKHVVMHNTLPHWREQLVDF-----YVSSPFVSVTDLANNPVEAQVS--------P 658
            .:...:..| |.:::.||||..|.:::..     ..|...|:|..:...|.....|        |
Mouse   679 ALCAGEPGP-KGLLIINTLPWKRTEVLALPKPCGAHSLALVTVPSIGYAPAPTPTSLQPLLPQQP 742

  Fly   659 VWSWHHDTLTKTIHPQGSTTKYRIIFKARVPPMGLATYVLTISDSKPEHTSYASNLLLRKNPTSL 723
            |:     .:.:|   .||.|....|.:.|:.|.|..|.::.::..:......|            
Mouse   743 VF-----VMQET---DGSVTLDNGIIRVRLDPTGCLTSLVLVASGREAIAEGA------------ 787

  Fly   724 PLGQYPEDVKFGD-----------PREISLR---VGNGPTLAFSEQGLLKSIQ--LTQDSP---- 768
             ||.  :.|.|.|           ...:..|   :|...|||...:|.|:...  |.|.||    
Mouse   788 -LGN--QFVLFDDVPLYWDAWDVMDYHLETRKPVLGQAGTLAVGTEGGLRGSAWFLLQISPNSRL 849

  Fly   769 ---------------HVPVHF----KFLK 778
                           |..||:    ||||
Mouse   850 SQEVVLDVGCPYVRFHTEVHWHEAHKFLK 878

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alpha-Man-IIaNP_001262413.1 GH38N_AMII_GMII_SfManIII_like 144..483 CDD:212120 60/346 (17%)
Alpha-mann_mid 478..554 CDD:214875 19/81 (23%)
Glyco_hydro_38C 744..1103 CDD:285047 17/60 (28%)
Man2c1XP_006511557.1 AMS1 65..1101 CDD:223460 162/874 (19%)
GH38N_AMII_Man2C1 277..569 CDD:212124 61/381 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3970
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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