DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment FER and Frk

DIOPT Version :9

Sequence 1:NP_524288.3 Gene:FER / 41118 FlyBaseID:FBgn0000723 Length:1325 Species:Drosophila melanogaster
Sequence 2:NP_077344.1 Gene:Frk / 79209 RGDID:621423 Length:506 Species:Rattus norvegicus


Alignment Length:390 Identity:138/390 - (35%)
Similarity:218/390 - (55%) Gaps:37/390 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   949 LSTNRPLYEEEWFHGVLPREEVVRLL----NNDGDFLVRETIRNEESQIVLSVCWNG-HKHFIVQ 1008
            ::.:|.|..|.||.|.:.|.:..:.|    |..|.||:||: .:::....|||...| .||:.::
  Rat   106 VAEDRSLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRES-ESQKGDFSLSVLDEGVVKHYRIR 169

  Fly  1009 TTGEGNFRF-EGPPFASIQELIMHQYHSELPVTVKSGAILRRPVCR--------------ERWEL 1058
            ...||.|.. ....|:::.|.:.:...:...:.||    |.:|..:              ::||:
  Rat   170 RLDEGGFFLTRRKTFSTLNEFVNYYTTTSDGLCVK----LEKPCLKIQVPTPFDLSYKTVDQWEI 230

  Fly  1059 SNDDVVLLERIGRGNFGDVYKAKLKSTKLDVAVKTCRMTLPDEQKRKFLQEGRILKQYDHPNIVK 1123
            ..:.:.||:|:|.|.||:|::....:| ..|||||.:....|  ...||:|.:|:|...||.:::
  Rat   231 DRNSIQLLKRLGSGQFGEVWEGLWNNT-TPVAVKTLKPGSMD--PNDFLREAQIMKSLRHPKLIQ 292

  Fly  1124 LIGICVQKQPIMIVMELVLGGSLLTYLRKNSNGLTTR--QQMGMCRDAAAGMRYLESKNCIHRDL 1186
            |..:|..:.||.|:.||:..|||..|| :|..|...|  ||:.|....|:||.||||:|.|||||
  Rat   293 LYAVCTLEDPIYIITELMRHGSLQEYL-QNDGGSKIRLTQQVDMAAQVASGMAYLESQNYIHRDL 356

  Fly  1187 AARNCLVDLEHSV-KISDFGMSR----EEEEYIVSDGMKQIPVKWTAPEALNFGKYTSLCDVWSY 1246
            ||||.||. ||:: |::|||::|    :.|:...|....::|||||||||:...|::...||||:
  Rat   357 AARNVLVG-EHNIYKVADFGLARVFKVDNEDIYESKHEIKLPVKWTAPEAIRTNKFSIKSDVWSF 420

  Fly  1247 GILMWEIFSKGDTPYSGMTNSRARERIDTGYRMPTPKSTPEEMYRLMLQCWAADAESRPHFDEIY 1311
            |||::||.:.|..||||||.::....:...||:|.|.:.||:.|.:|::||..:.:.||.|:.::
  Rat   421 GILLYEIITYGKMPYSGMTGAQVIHMLGQNYRLPQPSNCPEQFYSIMMECWNVEPKQRPTFETLH 485

  Fly  1312  1311
              Rat   486  485

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FERNP_524288.3 F-BAR_Fes_Fer 7..243 CDD:153341
SH2_Fps_family 953..1039 CDD:198224 25/91 (27%)
TyrKc 1063..1311 CDD:197581 107/254 (42%)
PTKc_Fes_like 1067..1315 CDD:270637 105/252 (42%)
FrkNP_077344.1 SH3_Src_like 48..105 CDD:212779
SH2_Src_Frk 113..208 CDD:199831 26/99 (26%)
PTKc_Frk_like 226..495 CDD:270653 109/265 (41%)
Pkinase_Tyr 235..488 CDD:285015 107/256 (42%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000006
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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