DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment FER and ntrk2b

DIOPT Version :9

Sequence 1:NP_524288.3 Gene:FER / 41118 FlyBaseID:FBgn0000723 Length:1325 Species:Drosophila melanogaster
Sequence 2:NP_001184090.2 Gene:ntrk2b / 570240 ZFINID:ZDB-GENE-010126-2 Length:799 Species:Danio rerio


Alignment Length:768 Identity:181/768 - (23%)
Similarity:288/768 - (37%) Gaps:230/768 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   751 DCPTNSSSSSSNN------NNNNKNTSSNSNHSASQSTIITSTITTTITTTTTTTPSKENSRLKF 809
            |.|.....|...|      :|..:..:.|.:|....|.:...|:|.|..|..:|.....||:|::
Zfish    49 DFPVLMPESDMENITDIYISNQKRLFTINEDHMKFYSNLRNLTVTNTHLTYVSTMAFFNNSKLQY 113

  Fly   810 KVPKIQKKS----KAIRNTFRSKLL-----------NFQLK------------------RSKPCK 841
            ........|    .|:||:..|.||           |..:|                  ::|...
Zfish   114 LNLGDNNLSTLSWMAMRNSNVSTLLLSGNPLQCACENIWIKLWLDDSERDVLQCLQEGGKAKTLS 178

  Fly   842 QCTKRRRIHPSKSVFDFAKEFEVEQPAGSAADEQFCNCPPAGQKPVKPSVQISGHKDHPFESSSG 906
            :.|.....||...||    ..:|.|.|||.| ...||   |...|...........:||..|:|.
Zfish   179 RLTLPLCEHPRVEVF----PTDVSQMAGSDA-TVICN---ASGSPTPELTWTLNSSEHPPLSTSH 235

  Fly   907 ELDENSDRDI---------DNDEEEEDSASDDV---------------------LSMKDHCYCVP 941
            |:.:...:.:         ||..:...||.:.|                     |..:...:|:|
Zfish   236 EISKMDLQSVLTLNGLSPNDNGRKLICSAENIVGQIEATVMLNISFPPTVLELYLPERSQDWCIP 300

  Fly   942 SLAASISLSTNRPLYEEEWFHGVLPREEVVRLLNNDGDFLVRETIRNEESQIV---------LSV 997
            .:.      |..|..:..|:|...|.||             :|.||.|...|.         |..
Zfish   301 FVV------TGNPRPDLHWYHEGKPLEE-------------QEYIRTEIHDITNTEYHGCLKLDT 346

  Fly   998 CWNGHK--------------------HFI----VQTTG-EGNFRFEG------PPF--------- 1022
            ..:.|.                    ||:    |..:| ||.|.::.      ||.         
Zfish   347 PTHIHNGIYTLVASNEFGEDRGNVTAHFMRIPDVDHSGIEGVFYYDTTVSPDIPPLEDRVAVYIV 411

  Fly  1023 ---------ASIQELIMHQY--------------------------H------------------ 1034
                     ..|..|:..:|                          |                  
Zfish   412 VGIAGVALTGCILMLVFLKYGRSSKFGMKGSSSVISNDDDSASPLHHVSNGNNTPSSSEMGPDAV 476

  Fly  1035 ----SELPVTVKSGAILRRPVCRERWE-----LSNDDVVLLERIGRGNFGDVYKAKL-----KST 1085
                :::|| :::....|.|....:.:     :...:::|...:|.|.||.|:.|:.     ...
Zfish   477 IIGMTKIPV-IENPQYFRNPGSMLKSDTLVQHIKRHNILLKRELGEGAFGKVFLAECYNLSPDQE 540

  Fly  1086 KLDVAVKTCRMTLPDEQKRKFLQEGRILKQYDHPNIVKLIGICVQKQPIMIVMELVLGGSLLTYL 1150
            |:.|||||.: ...:..:..|.:|..:|....|.:|||..|:||:..|:::|.|.:..|.|..:|
Zfish   541 KILVAVKTLK-EASESGRADFHREAELLTNLQHEHIVKFYGVCVESDPLIMVFEYMKHGDLNKFL 604

  Fly  1151 RKN-------SNG-------LTTRQQMGMCRDAAAGMRYLESKNCIHRDLAARNCLVDLEHSVKI 1201
            |.:       ::|       ||..|.:.:.:..||||.||.|::.:|||||.|||||.....|||
Zfish   605 RAHGPDAVLMADGQQSLLVELTQPQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVKI 669

  Fly  1202 SDFGMSRE--EEEYIVSDGMKQIPVKWTAPEALNFGKYTSLCDVWSYGILMWEIFSKGDTPYSGM 1264
            .||||||:  ..:|....|...:|::|..||::.:.::|:..||||.|:::||||:.|..|:..:
Zfish   670 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRRFTTESDVWSLGVVLWEIFTYGKQPWYQL 734

  Fly  1265 TNSRARERIDTGYRMPTPKSTPEEMYRLMLQCWAADAESRPHFDEIYNVVDAL 1317
            :|:...|.|..|..:..|::.|:|:|.|||.||..:...|.:..||:|::.:|
Zfish   735 SNNEVIECITQGRVLQRPRTCPKEVYDLMLGCWQREPYMRLNIKEIHNLLQSL 787

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FERNP_524288.3 F-BAR_Fes_Fer 7..243 CDD:153341
SH2_Fps_family 953..1039 CDD:198224 26/191 (14%)
TyrKc 1063..1311 CDD:197581 93/268 (35%)
PTKc_Fes_like 1067..1315 CDD:270637 94/268 (35%)
ntrk2bNP_001184090.2 leucine-rich repeat 62..86 CDD:275378 3/23 (13%)
LRR_8 85..144 CDD:290566 16/58 (28%)
leucine-rich repeat 87..110 CDD:275378 6/22 (27%)
leucine-rich repeat 111..133 CDD:275378 5/21 (24%)
IG_like 194..279 CDD:214653 20/88 (23%)
Ig 205..275 CDD:143165 15/73 (21%)
Ig_TrkB_d5 297..375 CDD:143263 17/96 (18%)
PTKc_TrkB 507..796 CDD:270675 96/282 (34%)
Pkinase_Tyr 513..784 CDD:285015 95/271 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.