DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment FER and lyn

DIOPT Version :9

Sequence 1:NP_524288.3 Gene:FER / 41118 FlyBaseID:FBgn0000723 Length:1325 Species:Drosophila melanogaster
Sequence 2:XP_012820235.2 Gene:lyn / 549989 XenbaseID:XB-GENE-1015126 Length:508 Species:Xenopus tropicalis


Alignment Length:413 Identity:140/413 - (33%)
Similarity:213/413 - (51%) Gaps:63/413 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   948 SLSTNR-------------PLYEEEWFHGVLPREEVVRLL----NNDGDFLVRETIRNEESQIVL 995
            ||||.:             .|..||||...:.|::..|.|    ||.|.||:||   :|.|:...
 Frog   100 SLSTKKEGFIPSNYVARVNTLETEEWFFKDITRKDAERQLLAPGNNPGAFLIRE---SETSKGSY 161

  Fly   996 SVCWNGH--------KHFIVQTTGEGNFRFEGP--PFASIQELIMHQY--------------HSE 1036
            |:....:        ||:.::|...|.: :..|  .|.||.::|.|..              :|.
 Frog   162 SLSIRDYDPKTGDVIKHYKIRTLDNGGY-YISPRITFTSICDMIQHYQKQADGLCRKLDKPCYSP 225

  Fly  1037 LPVTVKSGAILRRPVCRERWELSNDDVVLLERIGRGNFGDVYKAKL-KSTKLDVAVKTCRMTLPD 1100
            .|         ::|..::.||:..:.:.|::::|.|.||:|:.... .|||  |||||.:.....
 Frog   226 KP---------QKPWDKDAWEIPRESIKLVKKLGAGQFGEVWMGFYNNSTK--VAVKTLKPGTMS 279

  Fly  1101 EQKRKFLQEGRILKQYDHPNIVKLIGICVQKQPIMIVMELVLGGSLLTYLRKNSNG-LTTRQQMG 1164
            .|  .|::|..::|...|..:|:|..:..:::||.|:.|.:..||||.:|:.:... :...:.:.
 Frog   280 VQ--AFMEEANLMKSLQHDKLVRLYAVVSKEEPIYIITEFMAKGSLLDFLKSDEGAKVILPKLID 342

  Fly  1165 MCRDAAAGMRYLESKNCIHRDLAARNCLVDLEHSVKISDFGMSR--EEEEYIVSDGMKQIPVKWT 1227
            .....|.||.|:|.||.|||||.|.|.||......||:|||::|  |:.||...:|.| .|:|||
 Frog   343 FSAQIAEGMAYIEKKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAK-FPIKWT 406

  Fly  1228 APEALNFGKYTSLCDVWSYGILMWEIFSKGDTPYSGMTNSRARERIDTGYRMPTPKSTPEEMYRL 1292
            ||||:|||.:|...||||:|:|::||.:.|..||.||:||.....:..|||||..::.|.|:|.:
 Frog   407 APEAINFGSFTIKSDVWSFGVLLYEIITTGKIPYPGMSNSDVMTALQRGYRMPRMENCPVELYDI 471

  Fly  1293 MLQCWAADAESRPHFDEIYNVVD 1315
            |.:||...||.||.||.:.:|:|
 Frog   472 MKECWKEKAEERPTFDYLQSVLD 494

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FERNP_524288.3 F-BAR_Fes_Fer 7..243 CDD:153341
SH2_Fps_family 953..1039 CDD:198224 29/126 (23%)
TyrKc 1063..1311 CDD:197581 101/251 (40%)
PTKc_Fes_like 1067..1315 CDD:270637 101/251 (40%)
lynXP_012820235.2 SH3_Lyn 63..118 CDD:212937 4/17 (24%)
SH2_Src_Lyn 121..221 CDD:198227 27/103 (26%)
PTKc_Lyn 235..506 CDD:270657 105/265 (40%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000006
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.