DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment FER and Csk

DIOPT Version :9

Sequence 1:NP_524288.3 Gene:FER / 41118 FlyBaseID:FBgn0000723 Length:1325 Species:Drosophila melanogaster
Sequence 2:NP_001262476.1 Gene:Csk / 41398 FlyBaseID:FBgn0262081 Length:1052 Species:Drosophila melanogaster


Alignment Length:1140 Identity:268/1140 - (23%)
Similarity:443/1140 - (38%) Gaps:298/1140 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   331 KMIEHVNGGSPVANGSIISNGSNTSNGIQSNKDSLCRQSKDLNALR----CQEKQKQKLV---DM 388
            ::::..:..:..:|.:..|:.|.||:|.|:...:..|.::.:....    .|:.:::...   |:
  Fly    39 RVLKPASASASPSNSNNESDNSQTSSGSQTASSASKRSNRSVGRSHRGSIAQDTRRRYYFGSKDI 103

  Fly   389 IKCALN-EVGCEELPSGCDDDLTLEQNFIENGYNNEQQRSNSTSSPGLGIMNELMRRGGVLTLL- 451
            ..|..: |.......||  ..||...:.:    .:::..:::|.:.|..|..  .||..:|... 
  Fly   104 YWCKQSREAAAAATLSG--SGLTRSASSV----THKEASTHATHTGGQVISR--ARRKPILLCSS 160

  Fly   452 --------RGRGRHFKRKSTPQPATPMTRSRQGRFNKLQPRSQSLGSLSVIRDGNGPSPARYEPI 508
                    |.|..:|..|..|.||            :..|.:.:..:.|...:.:.|..||   :
  Fly   161 LSAAYAPPRRREFYFCDKYAPGPA------------RSTPTTTTTSATSAKHESSPPIDAR---L 210

  Fly   509 TN-----HRLRQAASVHYLGEEIATSSTNPPDLTRLRRTQCSMLCLGEDEEPVVLASPAPLTQLT 568
            .|     ||..||:...                |.|::|:...  ||...|     ..:...|.|
  Fly   211 LNFLRCAHRKFQASKAK----------------TELQQTKDRF--LGNSRE-----RTSKNGQQT 252

  Fly   569 AAVLTNTNNNHIYADLELDKKK---DTSPSPECKGEQIQPKKEQ-----------IRIEINQ--- 616
            :..|....::..:.|.|...:|   :.|..|:.|.|:...:||.           |.:||.|   
  Fly   253 SRSLPPIASSEEWFDEEAQARKTSHEKSQKPKPKPEENHKEKEAISRKASGEGDLITVEIKQGLL 317

  Fly   617 ------TAPQNSIDAHLDRIDELNRVLDDRLKRTLQPSDDVNAIESAEENHIQTRKLAKDP--DS 673
                  |....::::|..........:....:...|||..|.|..:       |...|.||  ..
  Fly   318 RKQTATTTTGQAMNSHATATQNGQTTVVGHHRGFSQPSVTVAAAAA-------TGSTAGDPWFLQ 375

  Fly   674 QTKRSSSSSSECRSSKDTSHSKKRSLSFSQ------KSISNIFSNLKEFSKSPLVRMGKNHILNE 732
            .|......::..|.:|..:......|....      .::..:..:.::.|:|      :.||:  
  Fly   376 TTGHQMPPTAPLRHNKRPAPQPNAVLGAGSSGTAPGSAVGAVLLHQQQLSQS------QPHIV-- 432

  Fly   733 EQDAKRTQPSQHHHSSGSDCPTNSSSS-----SSNNNNNNKNTSSNSNHSASQSTIITSTITTTI 792
               .....|..|||...:..|..:.::     ||:..|::...||.||||....       :.|.
  Fly   433 ---PPSIPPHHHHHRENNVHPIQAGAAAALHLSSHALNSHNLISSASNHSPKSP-------SQTQ 487

  Fly   793 TTTTTTTPSKENSRLKFKVPKIQKKSKAIRNTFRSKLLNFQLKRSKPCKQCTKRRRIHPSKSVFD 857
            ....||...::..:        |:.|.:|.:||.                        |:.:|  
  Fly   488 QQQQTTNQQQQQQQ--------QQASHSILSTFA------------------------PAPTV-- 518

  Fly   858 FAKEFEVEQPAGS------------AADEQ-------FCNCPPAG------------------QK 885
                 ...|||||            .|.:|       ..||||.|                  ::
  Fly   519 -----AAVQPAGSQSVAGTAAAVAAVAQQQQQQHLQLLANCPPGGAGLMSSSLNAAQMGMHGAER 578

  Fly   886 PVKP-SVQISGHK----------DHPFESS----------SGELDENSDR---DID--------N 918
            .:.| |:.:||.:          ..|.::|          ||....::..   ||:        |
  Fly   579 ALPPKSLALSGSQHGSNMLLHTAPQPPQASQPAAVVGVSGSGSAGMSTSLHSFDINGVTAGSGVN 643

  Fly   919 DEEEEDSASDDVLSMKDHCYCVPSLAASISLSTNRP----------LYEEEWFHGVLPREEVVRL 973
            ......|.|...:   :|        ||:|.:...|          |....||||.:.|:|...|
  Fly   644 ASSAWSSGSTTAM---NH--------ASLSPTALAPQQGRSRCEVKLNAMPWFHGSITRDEAEHL 697

  Fly   974 L--NNDGDFLVRETIRNEESQIVLSVCWNGH-KHFIVQ------TTGEGNFRFEGPPFASIQELI 1029
            |  ..||.|||||: .|......|.||:... :|:.|:      |..:..:      |.::.:|:
  Fly   698 LQPREDGLFLVRES-TNFPGDYTLCVCFQSKVEHYRVKYLENKLTIDDEEY------FENLGQLV 755

  Fly  1030 MHQYHSE-----------LPVTVKSG-AILRRPVCRERWELSNDDVVLLERIGRGNFGDVYKAKL 1082
            .| |.::           ||...|.. .|..:....:.|.:...::.|.|.||:|.||||....|
  Fly   756 AH-YEADADGLCTQLIKCLPKLGKQEFCINSKDFVDKGWVIPEAELQLRESIGKGEFGDVMLGIL 819

  Fly  1083 KSTKLDVAVKTCRMTLPDE-QKRKFLQEGRILKQYDHPNIVKLIGICVQKQPIMIVMELVLGGSL 1146
            ::.|  ||||    .|.|| ..:|||.|..::...:|.|:||.||:....:.:.:|.|.:..|||
  Fly   820 RNEK--VAVK----MLKDEGAVQKFLAEASVMTTLEHDNLVKFIGLVFTSKHLYLVTEYMSKGSL 878

  Fly  1147 LTYLR-KNSNGLTTRQQMGMCRDAAAGMRYLESKNCIHRDLAARNCLVDLEHSVKISDFGMSREE 1210
            :.||| :....:|.:.|:....|.|:||.|||:|..:||||||||.|:..:...|:||||::| |
  Fly   879 VDYLRSRGRQHITKKDQIIFAYDTASGMEYLEAKKVVHRDLAARNVLISEDCVAKVSDFGLAR-E 942

  Fly  1211 EEYIVSDGMKQIPVKWTAPEALNFGKYTSLCDVWSYGILMWEIFSKGDTPYSGMTNSRARERIDT 1275
            |.|.:..|  ::|:||||||||..|::::..|:||:|||:|||:|.|..||..:..:...:.::.
  Fly   943 ECYNLDVG--KLPIKWTAPEALKNGRFSNKSDMWSFGILLWEIYSFGRVPYPRIPLADVVKHVEV 1005

  Fly  1276 GYRMPTPKSTPEEMYRLMLQCWAADAESRPHFDEI 1310
            ||:|..|:..|.|:|.:|.|.|..:...||.|.|:
  Fly  1006 GYKMEAPEGCPPEIYEMMRQAWDLNPAKRPTFAEL 1040

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FERNP_524288.3 F-BAR_Fes_Fer 7..243 CDD:153341
SH2_Fps_family 953..1039 CDD:198224 29/115 (25%)
TyrKc 1063..1311 CDD:197581 102/250 (41%)
PTKc_Fes_like 1067..1315 CDD:270637 101/246 (41%)
CskNP_001262476.1 SH2_csk_like 680..777 CDD:198190 28/104 (27%)
PTKc_Csk_like 793..1047 CDD:270635 103/257 (40%)
STYKc 800..1044 CDD:214568 102/250 (41%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45468353
Domainoid 1 1.000 165 1.000 Domainoid score I1208
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D17578at33392
OrthoFinder 1 1.000 - - FOG0000006
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24418
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
65.950

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