DRSC/TRiP Functional Genomics Resources

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Protein Alignment FER and rbm22

DIOPT Version :9

Sequence 1:NP_524288.3 Gene:FER / 41118 FlyBaseID:FBgn0000723 Length:1325 Species:Drosophila melanogaster
Sequence 2:NP_989108.1 Gene:rbm22 / 394713 XenbaseID:XB-GENE-971198 Length:417 Species:Xenopus tropicalis


Alignment Length:130 Identity:29/130 - (22%)
Similarity:49/130 - (37%) Gaps:43/130 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly  1148 TYLRKNSNGLTTRQQMGM-CRDAA-----------AGMRYLES---KNCIHRDLAARNCLVDLEH 1197
            |.|.:|.....|:::.|. |:..|           ..||:.::   :.|.......:.||:|||:
 Frog    26 TCLGENPYIRMTKEKYGKECKICARPFTVFRWCPGVRMRFKKTEVCQTCSKLKNVCQTCLLDLEY 90

  Fly  1198 S--VKISDFGMSREEE--------EYIV---------SDGMKQIPVKWTAPEALNFGKYTSLCDV 1243
            .  :::.|.|.|.::|        ||..         |||.:.:..         .||.||..|:
 Frog    91 GLPIQVRDAGASLKDEMPRSDVNKEYYTQNMEREIANSDGTRPVGA---------LGKATSSSDM 146

  Fly  1244  1243
             Frog   147  146

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
FERNP_524288.3 F-BAR_Fes_Fer 7..243 CDD:153341
SH2_Fps_family 953..1039 CDD:198224
TyrKc 1063..1311 CDD:197581 29/130 (22%)
PTKc_Fes_like 1067..1315 CDD:270637 29/130 (22%)
rbm22NP_989108.1 ZnF_C3H1 159..185 CDD:214632
RRM_RBM22 231..304 CDD:240670
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 303..417
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000006
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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